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The map label for this gene is recO

Identifier: 229586870

GI number: 229586870

Start: 775351

End: 776064

Strand: Direct

Name: recO

Synonym: RAF_ORF0741

Alternate gene names: 229586870

Gene position: 775351-776064 (Clockwise)

Preceding gene: 229586869

Following gene: 229586871

Centisome position: 60.64

GC content: 26.47

Gene sequence:

>714_bases
ATGAATATCAAAGATATAGGAGTAATAATTGCTAAAAAAACTTTGAAAGAAAATACATTTATTATTACGGTTTTTACTAA
AAATCATGGTTTATATTCGGGAGTTGTAAAAGAATTTTCTAAAAAAAGTAAATTTATATATCAAGAAGGGAATATTATAG
ATTTTCTTTGGCAGGCAAGATTACATGAACATATTGGCATGGCTAAATGTGAACTCATTAAATCTTACACCGGTTATTTT
ATCACAAATAAAGCTAAATTATATGCCTTTAATTCCGTTATATCTTTAATCAAAGAGTTATTTCATGAAAGAGAAGAACA
TTCTAAATTTTTTTCATTTCTAATTAACTATTTAGATAATTTATCAAAGAATTTTTGTTTTCGTGATTATATTAATTTTG
AGCTAGCTTTACTTGCCGAGACGGGTTATAAGCTTGATCTTACCAAATGCGGCGTGAGCCATGTTACAACTGATTTAATC
TATGTATCACCTAAATCAGCTAGAGCATTATCATATGCAGTAGGAAAACCTTATAAAGATAAATTATTGATGTTACCAAG
ATTTTTACTTTCAGATAATAGTGAGATTACATTAGAAGAAAAACGGCAAGCTTTAGCTCTAACAAACTATTTTTTTAATA
GATATTTATTTCATAATAATAGACAGGTTGAAGCACGCCAAACTTTTATTGAATATACTTTAAATAATTTTTAG

Upstream 100 bases:

>100_bases
AAATAATTAAAAAAATGCTAAAAATTAGCATTTTTAACTGGATTGCTTCGTCAATTACTCCGTAATTTTCCTTGCAATGA
CGAAAATTTAATAAAAAACC

Downstream 100 bases:

>100_bases
AGACTATATTTTTACTTTTATTTTTCTTATTTTATGATATACTTACTTAAGTAATTACTTAAATAAGTATGTAATATGAC
TAGAATAAGCATAGATATAC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNIKDIGVIIAKKTLKENTFIITVFTKNHGLYSGVVKEFSKKSKFIYQEGNIIDFLWQARLHEHIGMAKCELIKSYTGYF
ITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLDNLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLI
YVSPKSARALSYAVGKPYKDKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNNRQVEARQTFIEYTLNNF

Sequences:

>Translated_237_residues
MNIKDIGVIIAKKTLKENTFIITVFTKNHGLYSGVVKEFSKKSKFIYQEGNIIDFLWQARLHEHIGMAKCELIKSYTGYF
ITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLDNLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLI
YVSPKSARALSYAVGKPYKDKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNNRQVEARQTFIEYTLNNF
>Mature_237_residues
MNIKDIGVIIAKKTLKENTFIITVFTKNHGLYSGVVKEFSKKSKFIYQEGNIIDFLWQARLHEHIGMAKCELIKSYTGYF
ITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLDNLSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLI
YVSPKSARALSYAVGKPYKDKLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNNRQVEARQTFIEYTLNNF

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_RICAE (C3PNW8)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845371.1
- GeneID:   7815716
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0741
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27776; Mature: 27776

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKDIGVIIAKKTLKENTFIITVFTKNHGLYSGVVKEFSKKSKFIYQEGNIIDFLWQAR
CCCCHHHHEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
LHEHIGMAKCELIKSYTGYFITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLDN
HHHHCCHHHHHHHHHHCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYAVGKPYKD
HHHCCEEHHHCCEEEEEEECCCCEEEHHHCCHHHHHEEEEEECCCCCHHHHHHHCCCCHH
KLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNNRQVEARQTFIEYTLNNF
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIKDIGVIIAKKTLKENTFIITVFTKNHGLYSGVVKEFSKKSKFIYQEGNIIDFLWQAR
CCCCHHHHEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
LHEHIGMAKCELIKSYTGYFITNKAKLYAFNSVISLIKELFHEREEHSKFFSFLINYLDN
HHHHCCHHHHHHHHHHCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKNFCFRDYINFELALLAETGYKLDLTKCGVSHVTTDLIYVSPKSARALSYAVGKPYKD
HHHCCEEHHHCCEEEEEEECCCCEEEHHHCCHHHHHEEEEEECCCCCHHHHHHHCCCCHH
KLLMLPRFLLSDNSEITLEEKRQALALTNYFFNRYLFHNNRQVEARQTFIEYTLNNF
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA