Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 229586849

GI number: 229586849

Start: 748671

End: 749432

Strand: Direct

Name: yebC [C]

Synonym: RAF_ORF0717

Alternate gene names: 229586849

Gene position: 748671-749432 (Clockwise)

Preceding gene: 229586848

Following gene: 229586850

Centisome position: 58.56

GC content: 34.38

Gene sequence:

>762_bases
ATGGCCGGTCATTCAAAGTTCAAAAATATTCAGCATCGTAAAGGGGCTCAAGATAAAAAAAGAGCAAAAGTTTTCACTAA
ATTAATTCGTGAAATAGTTACTGCAGCTAAAACCGGTTCTTCTAATAACCCTGAAAATAATCCACGTCTTAGAAATGCTT
TAACCGCTGCACGTAGTCAAAATCTCCCTAAAGAAAGAATAGATAAAGCTATTAATAGTGCTAATGATTCTTCTAATAAC
GAAAATTATACGGAAATTAGATATGAAGGTTATGCACCGAATGGTATTGCTATAATAGTTGAAGTTTTAACCGATAATAA
AAACCGCACTGCTGCAGAAGTACGCTCTAGTTTTACTAAATATGGTGGGAGTTTAGGCGAAACCGGTAGTGTCAATTATT
TATTCAACCATTGCGGAGTTATTCAGTATCCAATAAATATAGCATCTAATGAAGATGTTTTAGAGGCAGTCATAGAAGCC
GGGGGGCATGATATTATATCCGATGATACCACCCATACAATCTATACGGATATTGAAAATTTCTCTAAAGTTCTAGCATT
TTTAACTGGCAAATACGGCATACCTGAAGATTCGTATATAGGCTGGATCCCATTAAATACAATAATTATAGATGATAAGG
AAAAAGCCGAAAAATTACTAAAGCTTGTGGAAGTTTTAGAAGAAAGCGATGATGTGCAAAGAGTTTTTGGGAATTATGAG
TTATCTGATGATGTTTACGAAATAATACAAGGAGAACCATGA

Upstream 100 bases:

>100_bases
GTTTGCAGACTTCTTGCTCTTTTTCCAGTTGATCTTCGTATATTACTTTTCATTTTACTTCAGAGTATATAATACTACTT
TTGAAAGAAAAGAAATAAAT

Downstream 100 bases:

>100_bases
CTTATAACGATGCAAATTATCAAATAATTATTTTAGCAGCCGGTAAAGGTACTAGAATGGAGTCCGATTTACCGAAAGTA
ATGCATAAAGTCGGTGGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MAGHSKFKNIQHRKGAQDKKRAKVFTKLIREIVTAAKTGSSNNPENNPRLRNALTAARSQNLPKERIDKAINSANDSSNN
ENYTEIRYEGYAPNGIAIIVEVLTDNKNRTAAEVRSSFTKYGGSLGETGSVNYLFNHCGVIQYPINIASNEDVLEAVIEA
GGHDIISDDTTHTIYTDIENFSKVLAFLTGKYGIPEDSYIGWIPLNTIIIDDKEKAEKLLKLVEVLEESDDVQRVFGNYE
LSDDVYEIIQGEP

Sequences:

>Translated_253_residues
MAGHSKFKNIQHRKGAQDKKRAKVFTKLIREIVTAAKTGSSNNPENNPRLRNALTAARSQNLPKERIDKAINSANDSSNN
ENYTEIRYEGYAPNGIAIIVEVLTDNKNRTAAEVRSSFTKYGGSLGETGSVNYLFNHCGVIQYPINIASNEDVLEAVIEA
GGHDIISDDTTHTIYTDIENFSKVLAFLTGKYGIPEDSYIGWIPLNTIIIDDKEKAEKLLKLVEVLEESDDVQRVFGNYE
LSDDVYEIIQGEP
>Mature_252_residues
AGHSKFKNIQHRKGAQDKKRAKVFTKLIREIVTAAKTGSSNNPENNPRLRNALTAARSQNLPKERIDKAINSANDSSNNE
NYTEIRYEGYAPNGIAIIVEVLTDNKNRTAAEVRSSFTKYGGSLGETGSVNYLFNHCGVIQYPINIASNEDVLEAVIEAG
GHDIISDDTTHTIYTDIENFSKVLAFLTGKYGIPEDSYIGWIPLNTIIIDDKEKAEKLLKLVEVLEESDDVQRVFGNYEL
SDDVYEIIQGEP

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family [H]

Homologues:

Organism=Homo sapiens, GI27545315, Length=252, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=46.7741935483871, Blast_Score=208, Evalue=2e-55,
Organism=Escherichia coli, GI1788294, Length=239, Percent_Identity=37.6569037656904, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17556100, Length=246, Percent_Identity=27.2357723577236, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=33.4600760456274, Blast_Score=106, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24583305, Length=174, Percent_Identity=31.6091954022989, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002876
- InterPro:   IPR017856 [H]

Pfam domain/function: PF01709 DUF28 [H]

EC number: NA

Molecular weight: Translated: 28157; Mature: 28025

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKFKNIQHRKGAQDKKRAKVFTKLIREIVTAAKTGSSNNPENNPRLRNALTAARSQ
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
NLPKERIDKAINSANDSSNNENYTEIRYEGYAPNGIAIIVEVLTDNKNRTAAEVRSSFTK
CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHH
YGGSLGETGSVNYLFNHCGVIQYPINIASNEDVLEAVIEAGGHDIISDDTTHTIYTDIEN
HCCCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
FSKVLAFLTGKYGIPEDSYIGWIPLNTIIIDDKEKAEKLLKLVEVLEESDDVQRVFGNYE
HHHHHHHHHCCCCCCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCCC
LSDDVYEIIQGEP
CCHHHHHHHCCCC
>Mature Secondary Structure 
AGHSKFKNIQHRKGAQDKKRAKVFTKLIREIVTAAKTGSSNNPENNPRLRNALTAARSQ
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
NLPKERIDKAINSANDSSNNENYTEIRYEGYAPNGIAIIVEVLTDNKNRTAAEVRSSFTK
CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHH
YGGSLGETGSVNYLFNHCGVIQYPINIASNEDVLEAVIEAGGHDIISDDTTHTIYTDIEN
HCCCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
FSKVLAFLTGKYGIPEDSYIGWIPLNTIIIDDKEKAEKLLKLVEVLEESDDVQRVFGNYE
HHHHHHHHHCCCCCCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCCC
LSDDVYEIIQGEP
CCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA