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The map label for this gene is lgtD [H]

Identifier: 229586730

GI number: 229586730

Start: 606886

End: 607731

Strand: Direct

Name: lgtD [H]

Synonym: RAF_ORF0579

Alternate gene names: 229586730

Gene position: 606886-607731 (Clockwise)

Preceding gene: 229586729

Following gene: 229586731

Centisome position: 47.47

GC content: 30.85

Gene sequence:

>846_bases
ATGCATAGTAATCTTCCAAAAATCTCAATAGTTTTACCGGTTTATAATAGAAAGAAGCTATTACCTTTTGCTATTGAGAG
TTGCCTTAATCAAAGCTTTAAAGACTTTGAGCTTATTATTATTGATGATTGCTCAAAAGATAATAGCGTTATAGTAGCTA
GGACATATGCAGAGCAGGATTCACGTATTAAGGTAATAGTAAATGAGACCAATAAAAGATTACCGGCAAGTCTTAATATT
GCTTTTAAAGAGGCCAAGGGGGAGTATTTTACTTGGACTTCAGATGATAATCTTTTCCATGAAAATGCTTTAGAAAAAAT
GGTTAAGATACTTGATAATTCACCTGAGATAGGGCTTGTATATACTGATTATACTTTGATCGATGACCACGGTAAAGTAG
GAATAAGACTTTATCAAGAACCTCCTGAGTTTTTACCGATTAGAGATTGCGTCGGTGCATGTTTCTTATATAGAGCCGAT
TTAGCAAGGCAAGTAGGTGGATATAATGAAAATATGCAGTTAGTGGATGATTATGAATATTGGCTAAGGTTTGGACTTGT
TACGAAATTTGCTCATATACCGGAATCTTTATATTTCTACCGAGTACATAATCAAAGCTTAACAATAGAGCGTAAAGTAG
AAGCAAAACAGGCAAAAAGAGTTTTAAAAGCATTATTTAAAGATCAATATATTATTCCTGCTGAGATTAAACCTATAAAT
GATTTATATAATTGGTTTATTGAAGATAGAAATTTAAGCTCTTATTTTAGGTTATTTAAAATAATTATTTGTAGTCCGAT
AATTACTATTTCGTATATTATTAAAAATCTAAGAAGAATAAGGTGA

Upstream 100 bases:

>100_bases
AATATATTATTAATCCTTGAAGATGGATGTAAAGCTGAAGAATCAGAACTAATAGAAAATATAATTAATAGTTTAAATAC
TCTTGATATGTTAGGAGGAC

Downstream 100 bases:

>100_bases
TATTTTAATGCTTTAATGTCATTCCCGCTTTTGCGGGAATGACATAGTAGAGCCATAGTACAACATCCTTAAAATAAATG
CAAAATCAAGATTTCATACA

Product: Glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MHSNLPKISIVLPVYNRKKLLPFAIESCLNQSFKDFELIIIDDCSKDNSVIVARTYAEQDSRIKVIVNETNKRLPASLNI
AFKEAKGEYFTWTSDDNLFHENALEKMVKILDNSPEIGLVYTDYTLIDDHGKVGIRLYQEPPEFLPIRDCVGACFLYRAD
LARQVGGYNENMQLVDDYEYWLRFGLVTKFAHIPESLYFYRVHNQSLTIERKVEAKQAKRVLKALFKDQYIIPAEIKPIN
DLYNWFIEDRNLSSYFRLFKIIICSPIITISYIIKNLRRIR

Sequences:

>Translated_281_residues
MHSNLPKISIVLPVYNRKKLLPFAIESCLNQSFKDFELIIIDDCSKDNSVIVARTYAEQDSRIKVIVNETNKRLPASLNI
AFKEAKGEYFTWTSDDNLFHENALEKMVKILDNSPEIGLVYTDYTLIDDHGKVGIRLYQEPPEFLPIRDCVGACFLYRAD
LARQVGGYNENMQLVDDYEYWLRFGLVTKFAHIPESLYFYRVHNQSLTIERKVEAKQAKRVLKALFKDQYIIPAEIKPIN
DLYNWFIEDRNLSSYFRLFKIIICSPIITISYIIKNLRRIR
>Mature_281_residues
MHSNLPKISIVLPVYNRKKLLPFAIESCLNQSFKDFELIIIDDCSKDNSVIVARTYAEQDSRIKVIVNETNKRLPASLNI
AFKEAKGEYFTWTSDDNLFHENALEKMVKILDNSPEIGLVYTDYTLIDDHGKVGIRLYQEPPEFLPIRDCVGACFLYRAD
LARQVGGYNENMQLVDDYEYWLRFGLVTKFAHIPESLYFYRVHNQSLTIERKVEAKQAKRVLKALFKDQYIIPAEIKPIN
DLYNWFIEDRNLSSYFRLFKIIICSPIITISYIIKNLRRIR

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788372, Length=101, Percent_Identity=39.6039603960396, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 32952; Mature: 32952

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSNLPKISIVLPVYNRKKLLPFAIESCLNQSFKDFELIIIDDCSKDNSVIVARTYAEQD
CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
SRIKVIVNETNKRLPASLNIAFKEAKGEYFTWTSDDNLFHENALEKMVKILDNSPEIGLV
CEEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
YTDYTLIDDHGKVGIRLYQEPPEFLPIRDCVGACFLYRADLARQVGGYNENMQLVDDYEY
EEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH
WLRFGLVTKFAHIPESLYFYRVHNQSLTIERKVEAKQAKRVLKALFKDQYIIPAEIKPIN
HHHHHHHHHHHHCCCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
DLYNWFIEDRNLSSYFRLFKIIICSPIITISYIIKNLRRIR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHSNLPKISIVLPVYNRKKLLPFAIESCLNQSFKDFELIIIDDCSKDNSVIVARTYAEQD
CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
SRIKVIVNETNKRLPASLNIAFKEAKGEYFTWTSDDNLFHENALEKMVKILDNSPEIGLV
CEEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
YTDYTLIDDHGKVGIRLYQEPPEFLPIRDCVGACFLYRADLARQVGGYNENMQLVDDYEY
EEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH
WLRFGLVTKFAHIPESLYFYRVHNQSLTIERKVEAKQAKRVLKALFKDQYIIPAEIKPIN
HHHHHHHHHHHHCCCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
DLYNWFIEDRNLSSYFRLFKIIICSPIITISYIIKNLRRIR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]