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The map label for this gene is recR

Identifier: 229586721

GI number: 229586721

Start: 595710

End: 596315

Strand: Direct

Name: recR

Synonym: RAF_ORF0570

Alternate gene names: 229586721

Gene position: 595710-596315 (Clockwise)

Preceding gene: 229586720

Following gene: 229586723

Centisome position: 46.59

GC content: 34.82

Gene sequence:

>606_bases
ATGAATGAAACAAATGATAATGATATAGATCAGCTAATTTATCTTTTTTCAAAATTACCCGGTCTTGGTATTAGATCGGC
AAGGCGTATAGCGCTTTACCTATTGCAAGATAAAGACGTAAGGTTAAAAAGCCTGATTAATAATCTTGTAGAGATAGATA
AGAAAATAGTAAAATGCGAGATTTGCGGTAATATGGATACGGAAAATATGTGCCGTATTTGTTCTTCTGAATATAGAGAT
AAATCAATTATTGCTATTGTCGAAACTGTGGCTGAATTATGGGCAATGGAGCGTAGCGGTAATTTTAAAGGTTTATATCA
TGTACTCGGTCATAATTTATCGGCAGCTAGTAGACAAAACCCTAGCATACTTCGGTTACCTGAACTACTTACAAGATGTT
TTGCAGAAAATATTAAAGAAGTTATTATTGCTACTAATTCTACTTTAGAAGGTCAGACTACTGCTTATTTTATTACAGAA
TATTTAAAAGAGCATCCTGCTAAAATTTCTCGCCTTGCTAGCGGTATACCTATCGGAGGTGAACTTGATTATTTAGACGA
GGGTACCGTATCTGCCGCTATTAACCTACGCCAACCTTTTGAGTAA

Upstream 100 bases:

>100_bases
AGTATATAAGGCGAGGAGCGGAGCATATACACTTAATAGGTGAGTACCGCAGTTCTTATAATACGACGTAGCTCATTTTT
CAAATTAAACGAGTATATTT

Downstream 100 bases:

>100_bases
AAATTAATAATTTTATTAAAGTTATAGTGAATCTTGATGAAATTCTAGATGATGTTCGCCGGCGAATTTTATTACATCAT
TATGATTTCCTTGATGATCA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNETNDNDIDQLIYLFSKLPGLGIRSARRIALYLLQDKDVRLKSLINNLVEIDKKIVKCEICGNMDTENMCRICSSEYRD
KSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSAASRQNPSILRLPELLTRCFAENIKEVIIATNSTLEGQTTAYFITE
YLKEHPAKISRLASGIPIGGELDYLDEGTVSAAINLRQPFE

Sequences:

>Translated_201_residues
MNETNDNDIDQLIYLFSKLPGLGIRSARRIALYLLQDKDVRLKSLINNLVEIDKKIVKCEICGNMDTENMCRICSSEYRD
KSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSAASRQNPSILRLPELLTRCFAENIKEVIIATNSTLEGQTTAYFITE
YLKEHPAKISRLASGIPIGGELDYLDEGTVSAAINLRQPFE
>Mature_201_residues
MNETNDNDIDQLIYLFSKLPGLGIRSARRIALYLLQDKDVRLKSLINNLVEIDKKIVKCEICGNMDTENMCRICSSEYRD
KSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSAASRQNPSILRLPELLTRCFAENIKEVIIATNSTLEGQTTAYFITE
YLKEHPAKISRLASGIPIGGELDYLDEGTVSAAINLRQPFE

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=191, Percent_Identity=36.1256544502618, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_RICAE (C3PNG9)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845222.1
- ProteinModelPortal:   C3PNG9
- SMR:   C3PNG9
- GeneID:   7814986
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0570
- OMA:   HGAISPM
- ProtClustDB:   PRK00076
- HAMAP:   MF_00017
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 22609; Mature: 22609

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETNDNDIDQLIYLFSKLPGLGIRSARRIALYLLQDKDVRLKSLINNLVEIDKKIVKCE
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHE
ICGNMDTENMCRICSSEYRDKSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSAASRQN
ECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
PSILRLPELLTRCFAENIKEVIIATNSTLEGQTTAYFITEYLKEHPAKISRLASGIPIGG
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ELDYLDEGTVSAAINLRQPFE
CCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MNETNDNDIDQLIYLFSKLPGLGIRSARRIALYLLQDKDVRLKSLINNLVEIDKKIVKCE
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHE
ICGNMDTENMCRICSSEYRDKSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSAASRQN
ECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
PSILRLPELLTRCFAENIKEVIIATNSTLEGQTTAYFITEYLKEHPAKISRLASGIPIGG
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ELDYLDEGTVSAAINLRQPFE
CCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA