Click here to switch to the map view.

The map label for this gene is 229586639

Identifier: 229586639

GI number: 229586639

Start: 499643

End: 500575

Strand: Direct

Name: 229586639

Synonym: RAF_ORF0473

Alternate gene names: NA

Gene position: 499643-500575 (Clockwise)

Preceding gene: 229586638

Following gene: 229586640

Centisome position: 39.08

GC content: 31.62

Gene sequence:

>933_bases
ATGAATGAAATTTTTTGTAGTACGTTACCTATTTTTTTAATTACGCTGCTTGGTAGTATTATCAAAAATAAATGGTTAAC
TTCAGAAGAATTTTGGCGTGGTATTGAGAAATTATCGTATTTTGTATTATTTCCTGCCATGTTGTTTAGTTACGTATCTA
CTGCCGATTTAAGCATTGCGCCCATAATTAAATTAGTAGTGGCTCTTATTATATCCACTATTCTTGTATCAATCGGTCTT
ATAATTTACCAAAAAAAATACAACATAGATAAAGTCCAATTTACTTCCATTTTTCAAGGATCGATTCGTTATAATAGCTA
CATTTTTTTTGGGGTAAGTAGCCCCTTGCTTGGTTCTAGCGGACTTTCAATCGTTGCCATTATTTCTTCTTATATGATTA
TTTTTACCAATATTTTATCGGTAATGATTTTCGCTTATTATATCCCTAATAAATCCGTGACTAATACTATTAGCACTAGT
TTTGTTTTAATGATGAAATTAATTGTGCGTAATCCGTTAATTATCGCAAGTTTAGTAGGATTTGTTTTTAATTACTCAAA
TCTTGAATTACATTTAGGGCTTAAGAAAACGTTAGATAGCCTTTCTAATGCCGCTTTAGCTATCGGTATGCTAAATGTTG
GGGCAGGGCTTAATTTTACTATTAGACAAGAGCTTTTACATAATGTAATGTTTACAAGCTTTGTTAAATTAGTTGCATTT
CCTCTAGTTAGTGTAGTAGTACTATGGTTAATGTCTATTGACGGATTAAATAGATCGGTAGGAATATTATATAGCTGCCT
TCCATGTGCGAGTACGGCTTATGTTTTATCTCGTCAACTTGACGGTGATCCTGATTCTATGGCGTCGATTATAACATTTA
CTACTTTTTTCTCGGTAGTTACTATATCAATTATTATGTATATAATGGGGTGA

Upstream 100 bases:

>100_bases
TCATTGCGAACGAAGTGAGTGTGGCAATCTCAGGAAGTTGGACGAAATTGCCACGTCGCTTCGCTCCTCGCAATGGTGTT
AAAATAAAAACTATTAACAA

Downstream 100 bases:

>100_bases
ATTTACCACGTCATTGTGAGCGACTGAAAGGAGCATGGCAATCTCAGGAATGTTGCCTGAGATTGCTTCGTCGATGCCTA
TTGCGTCTGCTTGCAATGAC

Product: Putative permease

Products: NA

Alternate protein names: Permease; Auxin Efflux Carrier Family Protein; Transporter AEC Family; Membrane Transporter; Malonate Transporter; Transporter Of Auxin Efflux Carrier Family; Transmembrane Protein; Permease Transmembrane Protein; Efflux Protein; Auxin Efflux Carrier Protein; Membrane Transport Family

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNEIFCSTLPIFLITLLGSIIKNKWLTSEEFWRGIEKLSYFVLFPAMLFSYVSTADLSIAPIIKLVVALIISTILVSIGL
IIYQKKYNIDKVQFTSIFQGSIRYNSYIFFGVSSPLLGSSGLSIVAIISSYMIIFTNILSVMIFAYYIPNKSVTNTISTS
FVLMMKLIVRNPLIIASLVGFVFNYSNLELHLGLKKTLDSLSNAALAIGMLNVGAGLNFTIRQELLHNVMFTSFVKLVAF
PLVSVVVLWLMSIDGLNRSVGILYSCLPCASTAYVLSRQLDGDPDSMASIITFTTFFSVVTISIIMYIMG

Sequences:

>Translated_310_residues
MNEIFCSTLPIFLITLLGSIIKNKWLTSEEFWRGIEKLSYFVLFPAMLFSYVSTADLSIAPIIKLVVALIISTILVSIGL
IIYQKKYNIDKVQFTSIFQGSIRYNSYIFFGVSSPLLGSSGLSIVAIISSYMIIFTNILSVMIFAYYIPNKSVTNTISTS
FVLMMKLIVRNPLIIASLVGFVFNYSNLELHLGLKKTLDSLSNAALAIGMLNVGAGLNFTIRQELLHNVMFTSFVKLVAF
PLVSVVVLWLMSIDGLNRSVGILYSCLPCASTAYVLSRQLDGDPDSMASIITFTTFFSVVTISIIMYIMG
>Mature_310_residues
MNEIFCSTLPIFLITLLGSIIKNKWLTSEEFWRGIEKLSYFVLFPAMLFSYVSTADLSIAPIIKLVVALIISTILVSIGL
IIYQKKYNIDKVQFTSIFQGSIRYNSYIFFGVSSPLLGSSGLSIVAIISSYMIIFTNILSVMIFAYYIPNKSVTNTISTS
FVLMMKLIVRNPLIIASLVGFVFNYSNLELHLGLKKTLDSLSNAALAIGMLNVGAGLNFTIRQELLHNVMFTSFVKLVAF
PLVSVVVLWLMSIDGLNRSVGILYSCLPCASTAYVLSRQLDGDPDSMASIITFTTFFSVVTISIIMYIMG

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34341; Mature: 34341

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIFCSTLPIFLITLLGSIIKNKWLTSEEFWRGIEKLSYFVLFPAMLFSYVSTADLSIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
PIIKLVVALIISTILVSIGLIIYQKKYNIDKVQFTSIFQGSIRYNSYIFFGVSSPLLGSS
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCEEECCEEEEECCCCCCCCC
GLSIVAIISSYMIIFTNILSVMIFAYYIPNKSVTNTISTSFVLMMKLIVRNPLIIASLVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FVFNYSNLELHLGLKKTLDSLSNAALAIGMLNVGAGLNFTIRQELLHNVMFTSFVKLVAF
HHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
PLVSVVVLWLMSIDGLNRSVGILYSCLPCASTAYVLSRQLDGDPDSMASIITFTTFFSVV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TISIIMYIMG
HHHHHHHHCC
>Mature Secondary Structure
MNEIFCSTLPIFLITLLGSIIKNKWLTSEEFWRGIEKLSYFVLFPAMLFSYVSTADLSIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
PIIKLVVALIISTILVSIGLIIYQKKYNIDKVQFTSIFQGSIRYNSYIFFGVSSPLLGSS
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCEEECCEEEEECCCCCCCCC
GLSIVAIISSYMIIFTNILSVMIFAYYIPNKSVTNTISTSFVLMMKLIVRNPLIIASLVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FVFNYSNLELHLGLKKTLDSLSNAALAIGMLNVGAGLNFTIRQELLHNVMFTSFVKLVAF
HHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
PLVSVVVLWLMSIDGLNRSVGILYSCLPCASTAYVLSRQLDGDPDSMASIITFTTFFSVV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TISIIMYIMG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA