| Definition | Rickettsia africae ESF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_012633 |
| Length | 1,278,540 |
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The map label for this gene is lysK [H]
Identifier: 229586638
GI number: 229586638
Start: 497941
End: 499509
Strand: Direct
Name: lysK [H]
Synonym: RAF_ORF0472
Alternate gene names: 229586638
Gene position: 497941-499509 (Clockwise)
Preceding gene: 229586635
Following gene: 229586639
Centisome position: 38.95
GC content: 37.28
Gene sequence:
>1569_bases ATGTCAAAAATTTGGGAAGATGCTATTAAGTCAAACGCGTGGCCTTTTGTTGAGGCTAAGAAGATATTAGATAGCTTAAA CGGTCAAATTCCTGAGAAGGGGTATGTATTATTTGAAACGGGTTATGGTCCTTCAGGTTTACCTCATATCGGTACTTTTG GTGAAAATGCCCGTATGGTGATGGTACAGAAAGCATTTGAGCAATTATCCGATATTCCGACTAAACTAATTTGCTTTTCC GATGATATGGACGGGCTTCGTAAAGTACCTAGCAATATCCCAAATCCTGAAATGGTGGCACAGTATATGGATATGCCGCT TACTTCTATCCCTGATACATTCGGTGAATGTGAAAGTTATGGGCATTATATGAATGCAAAGCTTCGCTCATTCCTTGATA AATTCGGCTTTGAGTATGAATTTTATAGCAGTACTAACTGTTATAAAGCTGGTATGTTTGATGAGATGCTGAGAATGGTG CTTGAGAAATATGACGAGATAATGGAGCTAATGCTACCGACTTTTAGAGAAGAGCGCAAGGCTACCTATTCACCTTTCAT GCCTATATGTCCGAAAACAGGTAAGGTACTGCAAGTACCTATAGAGAAATGGGATGCTAAAGCAGGCACTGTAACGTATA AAGACAAAGCCGGTAATTATATAGAAGTACCGGTAACAGGAGGGCATTGCAAATTACAGTGGAAGCCGGATTTTGGTATG CGTTGGGCTGCGCTTAAAGTCGATTATGAGATGTACGGCAAAGACCATTTGGCAAATGCTCGTCTTTATTCGGAAATTTG CCGAATCCTAGGAGGAAAGCCGCCGGTGCAGTTATGTTATGAGTTATTCTTAGATGAAAACGGTGAGAAAATATCAAAAT CAAAAGGTAATAGTATTAGCATTGATGATTGGCTTAAATATGCTCCTGTTGAAAGTATGGCATTATTTATGTATCAAAAT CCGACTAGAGCTAAGCGTTTGTTTTTTGATGTAATTCCTAAAAATGTTGATGAATATATTACTTTTAACCAGAAATATCA TTTAGAAGAGGACAGGGCAAAGCGTTTTGCAAATCCCGTTTATCACATCCATCACGGAAATGTACCGAAAATTGAGACTT TTGGAATTACCTATTCGTTGCTTTTAAATCTTACTTCTGTGTGTAATCCTTCGGATAAATCGGTGCTTTGGGGATTTATT AGCAAATATGAGCCAAAAGCAACTCCAAATACTAACCCTTATCTTGACCATTTAGCAGAATTTGCTATAAGATATTATAA TGACTTTATTAAAGCACATAAATCATATTTATCTCCTTCTGAAAAGCATAAGGTTATTTTGCAGGATATATTAGATATGT TATCTGATATAGCTGATCAAACCGAAGCTGAAGCAATTCAGAAAGCAATATATGATATAGGAATGAAAGCAGGATATGAA AATCTGCGTGATTACTTCAAAGATTTATATCAAATATTGCTTGGACAGAATGAAGGGCCAAGACTTGGGACTTTTATAAA GCTTTACGGGGTGCAGGAAATGAAAAAGCTGGTTGAAGGGCAGTTGTAG
Upstream 100 bases:
>100_bases CGCTTCGCTCCTCGCAATGACGGCGTTTAATTTGATATTTTACAAATAAATAAATTTAGTATATTGTCACTGATTATTAA TTAAAGCGCAAGAAAAATCA
Downstream 100 bases:
>100_bases CCTATATATCATTCCCGCATGGGTATCTAAGCGTCATTGCGAACGAAGTGAGTGTGGCAATCTCAGGAAGTTGGACGAAA TTGCCACGTCGCTTCGCTCC
Product: lysyl-tRNA synthetase
Products: NA
Alternate protein names: Lysine--tRNA ligase; LysRS [H]
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MSKIWEDAIKSNAWPFVEAKKILDSLNGQIPEKGYVLFETGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFS DDMDGLRKVPSNIPNPEMVAQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLRMV LEKYDEIMELMLPTFREERKATYSPFMPICPKTGKVLQVPIEKWDAKAGTVTYKDKAGNYIEVPVTGGHCKLQWKPDFGM RWAALKVDYEMYGKDHLANARLYSEICRILGGKPPVQLCYELFLDENGEKISKSKGNSISIDDWLKYAPVESMALFMYQN PTRAKRLFFDVIPKNVDEYITFNQKYHLEEDRAKRFANPVYHIHHGNVPKIETFGITYSLLLNLTSVCNPSDKSVLWGFI SKYEPKATPNTNPYLDHLAEFAIRYYNDFIKAHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYE NLRDYFKDLYQILLGQNEGPRLGTFIKLYGVQEMKKLVEGQL
Sequences:
>Translated_522_residues MSKIWEDAIKSNAWPFVEAKKILDSLNGQIPEKGYVLFETGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFS DDMDGLRKVPSNIPNPEMVAQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLRMV LEKYDEIMELMLPTFREERKATYSPFMPICPKTGKVLQVPIEKWDAKAGTVTYKDKAGNYIEVPVTGGHCKLQWKPDFGM RWAALKVDYEMYGKDHLANARLYSEICRILGGKPPVQLCYELFLDENGEKISKSKGNSISIDDWLKYAPVESMALFMYQN PTRAKRLFFDVIPKNVDEYITFNQKYHLEEDRAKRFANPVYHIHHGNVPKIETFGITYSLLLNLTSVCNPSDKSVLWGFI SKYEPKATPNTNPYLDHLAEFAIRYYNDFIKAHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYE NLRDYFKDLYQILLGQNEGPRLGTFIKLYGVQEMKKLVEGQL >Mature_521_residues SKIWEDAIKSNAWPFVEAKKILDSLNGQIPEKGYVLFETGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFSD DMDGLRKVPSNIPNPEMVAQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLRMVL EKYDEIMELMLPTFREERKATYSPFMPICPKTGKVLQVPIEKWDAKAGTVTYKDKAGNYIEVPVTGGHCKLQWKPDFGMR WAALKVDYEMYGKDHLANARLYSEICRILGGKPPVQLCYELFLDENGEKISKSKGNSISIDDWLKYAPVESMALFMYQNP TRAKRLFFDVIPKNVDEYITFNQKYHLEEDRAKRFANPVYHIHHGNVPKIETFGITYSLLLNLTSVCNPSDKSVLWGFIS KYEPKATPNTNPYLDHLAEFAIRYYNDFIKAHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYEN LRDYFKDLYQILLGQNEGPRLGTFIKLYGVQEMKKLVEGQL
Specific function: Unknown
COG id: COG1384
COG function: function code J; Lysyl-tRNA synthetase (class I)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR002904 - InterPro: IPR020754 - InterPro: IPR020756 - InterPro: IPR014729 [H]
Pfam domain/function: PF01921 tRNA-synt_1f [H]
EC number: =6.1.1.6 [H]
Molecular weight: Translated: 60040; Mature: 59908
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIWEDAIKSNAWPFVEAKKILDSLNGQIPEKGYVLFETGYGPSGLPHIGTFGENARMV CCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHH MVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMVAQYMDMPLTSIPDTFGECESY HHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCHHHHHHHH GHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLRMVLEKYDEIMELMLPTFREERK HHHHHHHHHHHHHHHCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC ATYSPFMPICPKTGKVLQVPIEKWDAKAGTVTYKDKAGNYIEVPVTGGHCKLQWKPDFGM CCCCCCCCCCCCCCCEEEECHHHCCCCCCEEEEECCCCCEEEEEEECCEEEEEECCCCCC RWAALKVDYEMYGKDHLANARLYSEICRILGGKPPVQLCYELFLDENGEKISKSKGNSIS EEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCCCCCCC IDDWLKYAPVESMALFMYQNPTRAKRLFFDVIPKNVDEYITFNQKYHLEEDRAKRFANPV HHHHHHHCCHHHHEEEEECCCHHHHHHHHHHHCCCHHHHEECCCEECCCHHHHHHHCCCE YHIHHGNVPKIETFGITYSLLLNLTSVCNPSDKSVLWGFISKYEPKATPNTNPYLDHLAE EEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH FAIRYYNDFIKAHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYE HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH NLRDYFKDLYQILLGQNEGPRLGTFIKLYGVQEMKKLVEGQL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHCCCC >Mature Secondary Structure SKIWEDAIKSNAWPFVEAKKILDSLNGQIPEKGYVLFETGYGPSGLPHIGTFGENARMV CHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHH MVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMVAQYMDMPLTSIPDTFGECESY HHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCHHHHHHHH GHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLRMVLEKYDEIMELMLPTFREERK HHHHHHHHHHHHHHHCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC ATYSPFMPICPKTGKVLQVPIEKWDAKAGTVTYKDKAGNYIEVPVTGGHCKLQWKPDFGM CCCCCCCCCCCCCCCEEEECHHHCCCCCCEEEEECCCCCEEEEEEECCEEEEEECCCCCC RWAALKVDYEMYGKDHLANARLYSEICRILGGKPPVQLCYELFLDENGEKISKSKGNSIS EEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCCCCCCC IDDWLKYAPVESMALFMYQNPTRAKRLFFDVIPKNVDEYITFNQKYHLEEDRAKRFANPV HHHHHHHCCHHHHEEEEECCCHHHHHHHHHHHCCCHHHHEECCCEECCCHHHHHHHCCCE YHIHHGNVPKIETFGITYSLLLNLTSVCNPSDKSVLWGFISKYEPKATPNTNPYLDHLAE EEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH FAIRYYNDFIKAHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYE HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH NLRDYFKDLYQILLGQNEGPRLGTFIKLYGVQEMKKLVEGQL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA