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The map label for this gene is xerD [H]

Identifier: 229586627

GI number: 229586627

Start: 485147

End: 486067

Strand: Direct

Name: xerD [H]

Synonym: RAF_ORF0459

Alternate gene names: 229586627

Gene position: 485147-486067 (Clockwise)

Preceding gene: 229586617

Following gene: 229586628

Centisome position: 37.95

GC content: 33.33

Gene sequence:

>921_bases
ATGGGATTTATTGCGCAATTCCTAGAAATGCTTTTAGCCGAGAGAGCATTGTCAAAAAATTCTATACTTAGCTATAAGCG
TGACTTATTCGATTTTCAAAATTATCTTGCTAAACACAAATTATCTGAATTAAATATTACTACTGAGAATATTAGAGACT
GGATTGAGTATCTAGCAAGTAATGATTTGCAAGCACGCTCAATCAACAGAAAAATCTCAACTATAAAAAGTTATTATGAA
TTTTTAATTAGCGAAAACCATACCGCGTTTAATCCGGTTCTTAACGTAGATTTGCCCAAATATCAAAATAAACTTCCCGA
AATATTATCTATAGCTCAAATTAAATCGTTACTTGAACATTGCTCTCAAGATAATTCTCCTGAAGGTATCAGGCTTAATG
CTATGATTCATTTGCTTTATGCTAGCGGTCTTAGAGTCTCGGAGCTTGTTAGTCTTAAGCTTGCTGATATTCTGACTAAT
AAAACGTCTAAAGGAGAAGTAAGAAAAATATTTTCGGTACTTGGTAAAGGTAATAAGGAAAGAGTCATAGTAATAAATGA
ACAGGCAGTTATCAGTATTGCTAAATATCTTGCAATTAGAGGTGTTTTTGTGAATAAAGCTAAACCCAGAAATCTAATTT
ATTTATTTCCTTCATCAGCTTTAGCGGGTTATATGACTAGGCAAAATTTTGCTATTCTGTTAAAATCTGCTGCCCTTTAT
GCAGGACTTAACCCTGAGTATATTTCTCCGCATATATTACGTCACAGTTTTGCAAGTCATTTGCTTGAGGGCGGAGCAGA
CTTAAGAGTAATTCAAGAGCTGCTTGGTCACGCTGATATATCTACTACCCAAATATATACTCATCTTCAAACTAATCATC
TCAAAAAAGCATTGTTGCATCATCCTCTCAATAAAAATTAA

Upstream 100 bases:

>100_bases
ATTAGGCTGGGTAGCAAAGTGGTAATGCCGTGGACTGCAAATCCTCTATTCGTCGGTTCGATTCCGACCCTGGCCTCCAT
TATAGAAATTAAAACATCTT

Downstream 100 bases:

>100_bases
TTTATCTTAATCTTCTATAAAGTACTTGTTAATATTTCTTAACTAAATATAATACTTCTTATTAAATATAAGGAATAAAT
TATATGAAGCTAAAAGACAT

Product: site-specific tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MGFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKISTIKSYYE
FLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTN
KTSKGEVRKIFSVLGKGNKERVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALY
AGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLHHPLNKN

Sequences:

>Translated_306_residues
MGFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKISTIKSYYE
FLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTN
KTSKGEVRKIFSVLGKGNKERVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALY
AGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLHHPLNKN
>Mature_305_residues
GFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKISTIKSYYEF
LISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNK
TSKGEVRKIFSVLGKGNKERVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA
GLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLHHPLNKN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=301, Percent_Identity=39.5348837209302, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1790244, Length=294, Percent_Identity=35.0340136054422, Blast_Score=157, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34651; Mature: 34520

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLAS
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEH
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
CSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKE
HCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
RVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALY
EEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
AGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLH
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
HPLNKN
CCCCCC
>Mature Secondary Structure 
GFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLAS
CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEH
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
CSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKE
HCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
RVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALY
EEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
AGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLH
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
HPLNKN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]