| Definition | Rickettsia africae ESF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_012633 |
| Length | 1,278,540 |
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The map label for this gene is 229586617
Identifier: 229586617
GI number: 229586617
Start: 475880
End: 476605
Strand: Direct
Name: 229586617
Synonym: RAF_ORF0445
Alternate gene names: NA
Gene position: 475880-476605 (Clockwise)
Preceding gene: 229586616
Following gene: 229586627
Centisome position: 37.22
GC content: 33.88
Gene sequence:
>726_bases ATGAGTTTTTGTGTGGGATGTTTATATTTAACAAAATACATTATTCCTAATAATTTTCAAAAAGAAGAGCTTGGAAGTCT TGGCGGGTTTTTATCGGGTGTAGTCGGTAGTATGTATGCGGTATCAACCGGTTTGGTATTAATTTATTTACTCGGTAATT TTAATGAAGCACAAGAAGGGGTGGCAGCAGAATCTATAGTGTTGATGAGGCTTGCAGATAGTGTAGGTTGGCTTCCTCAT GAAATGAGGCCTACAATTTATCTAGATATTAAAAATTATACCAAAGGTGTAATGCGGCGTGAATGGCAATTAATGAAAGA CGGCAAGCAAATCGGTCATGAAGCTCTTAGTTTCCTCCAAGATATTAATAAGAGACTACAAGCTTATAAAGCAAGCGAGC AAGTGCAGCTATTGACTAAGCAGGAAATCATTGAGGAGATAAAAGAGCTTTATACAGTAAGGTATAACAGGATTAAAATG TCCTATTTTTCCTTAAATATTCAATATTGGATAGTTGTGTGTATAATGACTGCTATTAATTTAATTTTTGTCTGTATGTT TGGCACCAAGCTTTATTTACATAAGATTTCGGTTGGTTTAGTTTGTATCACTTCATCATCAATGCTTTTGTTATTATTTA TATTAGACAAACCTTTTCGAGGTCCTTTTGCCGTAAGTCAATATGACCTTATTAAGGCTGTACATTATATTGAGAGATTA AATTAG
Upstream 100 bases:
>100_bases TTCAGCAGGACATGGTTAATAATACCTATGTAATCATATAATTGACTTTATCTATACCGTTCCTAATATTGTTTTATTCA TCATAATAAATATTGTTTTG
Downstream 100 bases:
>100_bases TGATATCTGTAACAACATAACGCCATAATTTATCCGTGCCTTTAGTAATACCTATACGAGCAGTAGTAGAGTAGGGTAGC TTTAAGCCGATATCGCCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSFCVGCLYLTKYIIPNNFQKEELGSLGGFLSGVVGSMYAVSTGLVLIYLLGNFNEAQEGVAAESIVLMRLADSVGWLPH EMRPTIYLDIKNYTKGVMRREWQLMKDGKQIGHEALSFLQDINKRLQAYKASEQVQLLTKQEIIEEIKELYTVRYNRIKM SYFSLNIQYWIVVCIMTAINLIFVCMFGTKLYLHKISVGLVCITSSSMLLLLFILDKPFRGPFAVSQYDLIKAVHYIERL N
Sequences:
>Translated_241_residues MSFCVGCLYLTKYIIPNNFQKEELGSLGGFLSGVVGSMYAVSTGLVLIYLLGNFNEAQEGVAAESIVLMRLADSVGWLPH EMRPTIYLDIKNYTKGVMRREWQLMKDGKQIGHEALSFLQDINKRLQAYKASEQVQLLTKQEIIEEIKELYTVRYNRIKM SYFSLNIQYWIVVCIMTAINLIFVCMFGTKLYLHKISVGLVCITSSSMLLLLFILDKPFRGPFAVSQYDLIKAVHYIERL N >Mature_240_residues SFCVGCLYLTKYIIPNNFQKEELGSLGGFLSGVVGSMYAVSTGLVLIYLLGNFNEAQEGVAAESIVLMRLADSVGWLPHE MRPTIYLDIKNYTKGVMRREWQLMKDGKQIGHEALSFLQDINKRLQAYKASEQVQLLTKQEIIEEIKELYTVRYNRIKMS YFSLNIQYWIVVCIMTAINLIFVCMFGTKLYLHKISVGLVCITSSSMLLLLFILDKPFRGPFAVSQYDLIKAVHYIERLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27612; Mature: 27481
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFCVGCLYLTKYIIPNNFQKEELGSLGGFLSGVVGSMYAVSTGLVLIYLLGNFNEAQEG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC VAAESIVLMRLADSVGWLPHEMRPTIYLDIKNYTKGVMRREWQLMKDGKQIGHEALSFLQ HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DINKRLQAYKASEQVQLLTKQEIIEEIKELYTVRYNRIKMSYFSLNIQYWIVVCIMTAIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHEEEHHHHHHHHHHHHHHH LIFVCMFGTKLYLHKISVGLVCITSSSMLLLLFILDKPFRGPFAVSQYDLIKAVHYIERL HHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC N C >Mature Secondary Structure SFCVGCLYLTKYIIPNNFQKEELGSLGGFLSGVVGSMYAVSTGLVLIYLLGNFNEAQEG CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC VAAESIVLMRLADSVGWLPHEMRPTIYLDIKNYTKGVMRREWQLMKDGKQIGHEALSFLQ HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DINKRLQAYKASEQVQLLTKQEIIEEIKELYTVRYNRIKMSYFSLNIQYWIVVCIMTAIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHEEEHHHHHHHHHHHHHHH LIFVCMFGTKLYLHKISVGLVCITSSSMLLLLFILDKPFRGPFAVSQYDLIKAVHYIERL HHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC N C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA