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The map label for this gene is capD [H]

Identifier: 229586600

GI number: 229586600

Start: 452685

End: 453710

Strand: Direct

Name: capD [H]

Synonym: RAF_ORF0426

Alternate gene names: 229586600

Gene position: 452685-453710 (Clockwise)

Preceding gene: 229586599

Following gene: 229586601

Centisome position: 35.41

GC content: 35.09

Gene sequence:

>1026_bases
ATGTTTGTAGATAAAACTTTAATGATTACAGGAGGCACCGGTTCGTTTGGTAATGCAGTGCTTTCTCGTTTTTTTAAATC
CGGTATTATTAACGATATTAAGGAAATTCGTATTTTCAGTAGAGATGAAAAAAAGCAAGAGGATATGCGTATTGCTTTAA
ATAATCCGAAACTTAAATTCTATATCGGGGACGTACGCAATTATAAAAGTATTGATGAGGCAATGCATGGTGTAGATTAT
GTATTCCATGCCGCTGCTTTAAAGCAGGTTCCGACTTGTGAATTTTATCCTATGGAAGCAATAAATACTAACGTCTTAGG
TGCTGAAAATGTTTTAAGTGCTGCTATTAATAACAAAGTTACAAAAGTTATTGTACTGAGTACCGATAAGGCTGTATATC
CAATTAATGCAATGGGATTATCTAAAGCATTAATGGAAAAGTTAGCAATAGCAAAAGCACGTATGCGTTCTCCAGGTGAG
ACTGTGCTGTGCGTTACTAGATACGGTAACGTTATGGCTTCTAGAGGTTCGGTCATTCCTCTTTTTATCAATCAAATAAA
ACAAGGTAAGGAATTAACCATTACAGAACCGTCAATGACACGTTTTTTAATGTCGCTTGTAGATTCGGTGGATTTAGTTT
TATATGCGTTTGAGCATGGTCATCAGGGTGATATTTTCGTACAAAAATCTCCGGCAAGCACAATTGCAGTACTCGCAAAA
GCGTTACAAGATATATTCGATAGTAAAAATGAAATACGTTTTATCGGTACACGTCACGGCGAAAAACATTACGAATCATT
AGTATCATCAGAAGAAATGGCAAAAGCTGATGATTTAAGGGATTATTACCGTATTCCTATGGACGGGCGCGATCTTAATT
ATGCAAAATATTTTGTTGAAGGTGAAAAGAAAGTAGCACTTTTAGAGGATTACACTTCCCATAATACAAAACGTTTAAAT
TTAGAAGAAGTAAAAGAGTTATTACTGACTCTTGATTACGTACAAGAGGAGCTAAAAAATGCTTAA

Upstream 100 bases:

>100_bases
AACTGGACCCTGTGGACAAGCCACAGGATGACTACCTTAGAGTGTTTCTCGATTGACACAATGACAGAATGAATAATAAC
AAAATAGGTATTTATATATA

Downstream 100 bases:

>100_bases
GGTAATGACGATTGTTGGTACTCGTCCTGAACTTATTAAACTATGCTGCGTGATTTCTGAGTTTGATAAATATACTCATC
ACATCCTAGTTCACACCGGT

Product: Putative nucleoside-diphosphate sugar epimerase CapD

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MFVDKTLMITGGTGSFGNAVLSRFFKSGIINDIKEIRIFSRDEKKQEDMRIALNNPKLKFYIGDVRNYKSIDEAMHGVDY
VFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKVTKVIVLSTDKAVYPINAMGLSKALMEKLAIAKARMRSPGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGHQGDIFVQKSPASTIAVLAK
ALQDIFDSKNEIRFIGTRHGEKHYESLVSSEEMAKADDLRDYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLN
LEEVKELLLTLDYVQEELKNA

Sequences:

>Translated_341_residues
MFVDKTLMITGGTGSFGNAVLSRFFKSGIINDIKEIRIFSRDEKKQEDMRIALNNPKLKFYIGDVRNYKSIDEAMHGVDY
VFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKVTKVIVLSTDKAVYPINAMGLSKALMEKLAIAKARMRSPGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGHQGDIFVQKSPASTIAVLAK
ALQDIFDSKNEIRFIGTRHGEKHYESLVSSEEMAKADDLRDYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLN
LEEVKELLLTLDYVQEELKNA
>Mature_341_residues
MFVDKTLMITGGTGSFGNAVLSRFFKSGIINDIKEIRIFSRDEKKQEDMRIALNNPKLKFYIGDVRNYKSIDEAMHGVDY
VFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKVTKVIVLSTDKAVYPINAMGLSKALMEKLAIAKARMRSPGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGHQGDIFVQKSPASTIAVLAK
ALQDIFDSKNEIRFIGTRHGEKHYESLVSSEEMAKADDLRDYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLN
LEEVKELLLTLDYVQEELKNA

Specific function: Epimerizes UDP-galactose to UDP-glucose [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869
- InterPro:   IPR013692 [H]

Pfam domain/function: PF08485 Polysacc_syn_2C; PF02719 Polysacc_synt_2 [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 38418; Mature: 38418

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDKTLMITGGTGSFGNAVLSRFFKSGIINDIKEIRIFSRDEKKQEDMRIALNNPKLKF
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEE
YIGDVRNYKSIDEAMHGVDYVFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKV
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCE
TKVIVLSTDKAVYPINAMGLSKALMEKLAIAKARMRSPGETVLCVTRYGNVMASRGSVIP
EEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHH
LFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGHQGDIFVQKSPASTIAVLAK
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCHHHHHHHHH
ALQDIFDSKNEIRFIGTRHGEKHYESLVSSEEMAKADDLRDYYRIPMDGRDLNYAKYFVE
HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEC
GEKKVALLEDYTSHNTKRLNLEEVKELLLTLDYVQEELKNA
CCCEEEEEEHHHCCCCEEECHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVDKTLMITGGTGSFGNAVLSRFFKSGIINDIKEIRIFSRDEKKQEDMRIALNNPKLKF
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEE
YIGDVRNYKSIDEAMHGVDYVFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKV
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCE
TKVIVLSTDKAVYPINAMGLSKALMEKLAIAKARMRSPGETVLCVTRYGNVMASRGSVIP
EEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHH
LFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGHQGDIFVQKSPASTIAVLAK
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCHHHHHHHHH
ALQDIFDSKNEIRFIGTRHGEKHYESLVSSEEMAKADDLRDYYRIPMDGRDLNYAKYFVE
HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEC
GEKKVALLEDYTSHNTKRLNLEEVKELLLTLDYVQEELKNA
CCCEEEEEEHHHCCCCEEECHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA