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The map label for this gene is virB9-2 [H]

Identifier: 229586541

GI number: 229586541

Start: 389132

End: 389605

Strand: Direct

Name: virB9-2 [H]

Synonym: RAF_ORF0362

Alternate gene names: 229586541

Gene position: 389132-389605 (Clockwise)

Preceding gene: 229586540

Following gene: 229586542

Centisome position: 30.44

GC content: 25.11

Gene sequence:

>474_bases
ATGACAATAGTTAGATTTTATTTTTTAGTTTTTATATTATTAAGCGGTTTTACAGTACAACGAGAATGTTCACTTGTAGA
TGATCCATGTAATAGTAGTAATAATTATGTAGATGATTTATCTATAACTAAAGATAATAGGATAAAAACTTATATATATA
ATCCAAATGAAGTTTATTTATTAGTTTTGCATTTTGGCTTTCAATCGCATATAGAATTTGCTAAAAACGAAGAAGTCCAA
AATATAATTCTTGGGGATGCTTATGCTTGGAAAATAACTCCTTTGGCAAATAGATTATTTATTAAGCCTCTTGAAAAAGA
TATTCGTACAAATATGACTATTATAACTAATAAAAGAATATATGAATTTGATATCGCTTCTACGGAACTTATGATGGGTA
ACGAAAGGGATTTAGTATATGTAATTAAATTTTACTACCCTAAGAAAAATAGTAATTATATAGCAAGATTTTAA

Upstream 100 bases:

>100_bases
ATAGCGGTAGTAAGTTATGCTTATGTGCCTATGCAATTAACAGATTCAGAACTTGATATAAATCCGGTAGGGTTTCAAGT
GAACGGATATAGGGTAGACG

Downstream 100 bases:

>100_bases
TCGATGTCATTTCTGTGTAGATATGTCATTACGAGCAGCCGTAGGCTGCGTGGCAATCTTATGAAATGATACAAACTCCT
GAGATTGCGGACGTACAATT

Product: VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTIVRFYFLVFILLSGFTVQRECSLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEVQ
NIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRIYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYIARF

Sequences:

>Translated_157_residues
MTIVRFYFLVFILLSGFTVQRECSLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEVQ
NIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRIYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYIARF
>Mature_156_residues
TIVRFYFLVFILLSGFTVQRECSLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEVQN
IILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRIYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYIARF

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 18581; Mature: 18449

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVRFYFLVFILLSGFTVQRECSLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYL
CCHHHHHHHHHHHHCCCEEEEECCEECCCCCCCCCEECEEEECCCCCEEEEEECCCEEEE
LVLHFGFQSHIEFAKNEEVQNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRI
EEEECCCHHHHHHCCCCCEEEEEECCEEEEEEECCCCEEEECCCHHHHHCCEEEEECCEE
YEFDIASTELMMGNERDLVYVIKFYYPKKNSNYIARF
EEEECCCEEEEECCCCCEEEEEEEEECCCCCCEEEEC
>Mature Secondary Structure 
TIVRFYFLVFILLSGFTVQRECSLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYL
CHHHHHHHHHHHHCCCEEEEECCEECCCCCCCCCEECEEEECCCCCEEEEEECCCEEEE
LVLHFGFQSHIEFAKNEEVQNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRI
EEEECCCHHHHHHCCCCCEEEEEECCEEEEEEECCCCEEEECCCHHHHHCCEEEEECCEE
YEFDIASTELMMGNERDLVYVIKFYYPKKNSNYIARF
EEEECCCEEEEECCCCCEEEEEEEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA