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The map label for this gene is virB8-2

Identifier: 229586540

GI number: 229586540

Start: 388414

End: 389145

Strand: Direct

Name: virB8-2

Synonym: RAF_ORF0361

Alternate gene names: NA

Gene position: 388414-389145 (Clockwise)

Preceding gene: 229586539

Following gene: 229586541

Centisome position: 30.38

GC content: 32.1

Gene sequence:

>732_bases
ATGAATAATATATTTGGCTTCTTTAAATCAAGTAATAACTCGCAAAGCGGTGCAGGAGATACACAAACGCAAGAAAGTAT
TACATCGGCTAATCCTTTAAAAATTACTCAGAATTGGTATGAAGAGCGATCTGATAAGTTACTTGTTCAACGTAACTTAC
TTATCATATTAATAATACTACTAACCATTTTTATGGTTATAGCAACTTTAGTAATAGCCTTTGTAGTGAAATCTAAACAG
TTTGAGCCTTTTGTTATTCAGCTTAATAGTAATACCGGACGTGCCTCAGTGGTAGAACCTATTTCATCACCAGTGTTAAC
GGCGGATGAGTCTCTTACAAGGTATTTTATAAAGAAATACATAACGGCACGGGAAACATATAATCCAGTTGATTTTGCGA
CGATAGCTCGTACGACAATAAGATTATTTTCAACAAGCAGTGTTTATTACAATTATCTTGGCTATATAAGAAATAAAGAT
TTTGATCCTACTTTAAAATATAAAGAAGAGAATACTACATTTTTAGTAATAAAATCATGGTCAAAAATCGCAGCAGATAA
ATATATAGTTAGATTTTCCGTAAATGAAACATCAGGAAACCAATTAGTTTATAATAAAATAGCGGTAGTAAGTTATGCTT
ATGTGCCTATGCAATTAACAGATTCAGAACTTGATATAAATCCGGTAGGGTTTCAAGTGAACGGATATAGGGTAGACGAT
GACAATAGTTAG

Upstream 100 bases:

>100_bases
AGCGTAAATCCTTGTATAAGAAGACCTGTTAATTCAGTAAATATAGTATAAAAGTAATAGTTTTACACAATAACAATGTA
ATAATAAAAATACCTTTGAT

Downstream 100 bases:

>100_bases
ATTTTATTTTTTAGTTTTTATATTATTAAGCGGTTTTACAGTACAACGAGAATGTTCACTTGTAGATGATCCATGTAATA
GTAGTAATAATTATGTAGAT

Product: VirB8

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNNIFGFFKSSNNSQSGAGDTQTQESITSANPLKITQNWYEERSDKLLVQRNLLIILIILLTIFMVIATLVIAFVVKSKQ
FEPFVIQLNSNTGRASVVEPISSPVLTADESLTRYFIKKYITARETYNPVDFATIARTTIRLFSTSSVYYNYLGYIRNKD
FDPTLKYKEENTTFLVIKSWSKIAADKYIVRFSVNETSGNQLVYNKIAVVSYAYVPMQLTDSELDINPVGFQVNGYRVDD
DNS

Sequences:

>Translated_243_residues
MNNIFGFFKSSNNSQSGAGDTQTQESITSANPLKITQNWYEERSDKLLVQRNLLIILIILLTIFMVIATLVIAFVVKSKQ
FEPFVIQLNSNTGRASVVEPISSPVLTADESLTRYFIKKYITARETYNPVDFATIARTTIRLFSTSSVYYNYLGYIRNKD
FDPTLKYKEENTTFLVIKSWSKIAADKYIVRFSVNETSGNQLVYNKIAVVSYAYVPMQLTDSELDINPVGFQVNGYRVDD
DNS
>Mature_243_residues
MNNIFGFFKSSNNSQSGAGDTQTQESITSANPLKITQNWYEERSDKLLVQRNLLIILIILLTIFMVIATLVIAFVVKSKQ
FEPFVIQLNSNTGRASVVEPISSPVLTADESLTRYFIKKYITARETYNPVDFATIARTTIRLFSTSSVYYNYLGYIRNKD
FDPTLKYKEENTTFLVIKSWSKIAADKYIVRFSVNETSGNQLVYNKIAVVSYAYVPMQLTDSELDINPVGFQVNGYRVDD
DNS

Specific function: Unknown

COG id: COG3736

COG function: function code U; Type IV secretory pathway, component VirB8

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 27640; Mature: 27640

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNIFGFFKSSNNSQSGAGDTQTQESITSANPLKITQNWYEERSDKLLVQRNLLIILIIL
CCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHCCEEEHHHHHHHHHHHH
LTIFMVIATLVIAFVVKSKQFEPFVIQLNSNTGRASVVEPISSPVLTADESLTRYFIKKY
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCEECHHHHHHHHHHHH
ITARETYNPVDFATIARTTIRLFSTSSVYYNYLGYIRNKDFDPTLKYKEENTTFLVIKSW
HHHHCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECC
SKIAADKYIVRFSVNETSGNQLVYNKIAVVSYAYVPMQLTDSELDINPVGFQVNGYRVDD
CHHCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEECEEECC
DNS
CCC
>Mature Secondary Structure
MNNIFGFFKSSNNSQSGAGDTQTQESITSANPLKITQNWYEERSDKLLVQRNLLIILIIL
CCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHCCEEEHHHHHHHHHHHH
LTIFMVIATLVIAFVVKSKQFEPFVIQLNSNTGRASVVEPISSPVLTADESLTRYFIKKY
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCEECHHHHHHHHHHHH
ITARETYNPVDFATIARTTIRLFSTSSVYYNYLGYIRNKDFDPTLKYKEENTTFLVIKSW
HHHHCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECC
SKIAADKYIVRFSVNETSGNQLVYNKIAVVSYAYVPMQLTDSELDINPVGFQVNGYRVDD
CHHCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEECEEECC
DNS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]