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The map label for this gene is holA

Identifier: 229586433

GI number: 229586433

Start: 250294

End: 251268

Strand: Direct

Name: holA

Synonym: RAF_ORF0229

Alternate gene names: NA

Gene position: 250294-251268 (Clockwise)

Preceding gene: 229586432

Following gene: 229586434

Centisome position: 19.58

GC content: 27.59

Gene sequence:

>975_bases
ATGAAATTTTATTTTTCACAAATAGGTAGATTATTTGAACTAATAACATCCGGAAAGATTAGAGCTCTTTTACTATATGG
TCCTGATAAAGGTTATATAGAAAAAATTTGTAAGCATTTAGTACAAAGCTTAAATATGCTACAAACTTCTATAGAATACG
CAGATCTTAATATTTCATCTTTAGAAATATTACTTAATTCGTCTAATTTTTTTGGTCAAAAAGAATTAATTAAAATTAGA
TCGGTTGGGAATTCAATCGATCAGAATTTAAAAACAATTCTAAACAGTGATTATATAAATTTTCCTGTATTTATAGGTGA
AGCAATAACTTCTAGTGGGAGCATTAGAAAGTTTTTTGAAACGGAAGAATATTTAGCAGCAGTTGCTTGTTATCATGATG
ATGAAGCAAAAATTGAACGAATTATTTTAGGTAAAGTAGCAAAAACTAATAAAGTTATAAGTAAAGAAGCTATCATTTAT
TTAAAAGCTCATTTAAAAGGTGATCATGATTTAATTTGTAGCGAAATAAATAAATTAATATATTTTGTTCACGACGCACG
CGAAATTACTTTAAACGACGTTCTAGAAGTTATAAGTAGCGAAATTACGGCAAACGGCAGTGATTTAGCAATGTATTTTT
CAAAAAAAGATTATAGTAATTTTCTGCAAGAGCTTGATATATTAAAAAAACAAAATATCAATGAAGTTTTAATTATTAGA
GCATTAATAAGGCATTATTTAAGTTTATATATAGTTTTGTCGAAAGTAAAAAACGGTGAGCGTTTGGAACTCGCAATAAA
ATCATTATCACCACCGATTTTCTATCAGTATATTAATGATTTTACGAAGATAGCAAACGGTCTTAGCCTTACTGAATGTC
TAAAGACTTTAAAAGTGCTACAACAGGCAGAAGTGGATTATAAGTTAAATCCTGCTAGTTTCGATTTATTCCAAAGTATA
CTCCAAAGTAAATGA

Upstream 100 bases:

>100_bases
AATGTTGAAAGAGATAAAACAGGAATAGACTTGGCATATCAAGCAGCAGAAGAAATTCGTAGCAGATTAATTTTATATTT
TACACGGAAATAGTTAAGTT

Downstream 100 bases:

>100_bases
ACAGTAGACGAAGTTTAATTTGGAAAAGAGCAAGGAGACTATAAGGCGAGGAGCGGAGCGTATACTTCGTGAGTACCCTT
AATACGTGAGCACCGTAGCT

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKFYFSQIGRLFELITSGKIRALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADLNISSLEILLNSSNFFGQKELIKIR
SVGNSIDQNLKTILNSDYINFPVFIGEAITSSGSIRKFFETEEYLAAVACYHDDEAKIERIILGKVAKTNKVISKEAIIY
LKAHLKGDHDLICSEINKLIYFVHDAREITLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIR
ALIRHYLSLYIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYKLNPASFDLFQSI
LQSK

Sequences:

>Translated_324_residues
MKFYFSQIGRLFELITSGKIRALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADLNISSLEILLNSSNFFGQKELIKIR
SVGNSIDQNLKTILNSDYINFPVFIGEAITSSGSIRKFFETEEYLAAVACYHDDEAKIERIILGKVAKTNKVISKEAIIY
LKAHLKGDHDLICSEINKLIYFVHDAREITLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIR
ALIRHYLSLYIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYKLNPASFDLFQSI
LQSK
>Mature_324_residues
MKFYFSQIGRLFELITSGKIRALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADLNISSLEILLNSSNFFGQKELIKIR
SVGNSIDQNLKTILNSDYINFPVFIGEAITSSGSIRKFFETEEYLAAVACYHDDEAKIERIILGKVAKTNKVISKEAIIY
LKAHLKGDHDLICSEINKLIYFVHDAREITLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIR
ALIRHYLSLYIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYKLNPASFDLFQSI
LQSK

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921 [H]

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 36934; Mature: 36934

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYFSQIGRLFELITSGKIRALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADLNISS
CCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHE
LEILLNSSNFFGQKELIKIRSVGNSIDQNLKTILNSDYINFPVFIGEAITSSGSIRKFFE
EEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEHHHHCCCCCHHHHHH
TEEYLAAVACYHDDEAKIERIILGKVAKTNKVISKEAIIYLKAHLKGDHDLICSEINKLI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHE
YFVHDAREITLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIR
EEECCCCEECHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHH
ALIRHYLSLYIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QQAEVDYKLNPASFDLFQSILQSK
HHHCCCEEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MKFYFSQIGRLFELITSGKIRALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADLNISS
CCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHE
LEILLNSSNFFGQKELIKIRSVGNSIDQNLKTILNSDYINFPVFIGEAITSSGSIRKFFE
EEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEHHHHCCCCCHHHHHH
TEEYLAAVACYHDDEAKIERIILGKVAKTNKVISKEAIIYLKAHLKGDHDLICSEINKLI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHE
YFVHDAREITLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIR
EEECCCCEECHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHH
ALIRHYLSLYIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QQAEVDYKLNPASFDLFQSILQSK
HHHCCCEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]