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The map label for this gene is nusB

Identifier: 229586404

GI number: 229586404

Start: 214606

End: 215076

Strand: Direct

Name: nusB

Synonym: RAF_ORF0195

Alternate gene names: 229586404

Gene position: 214606-215076 (Clockwise)

Preceding gene: 229586399

Following gene: 229586405

Centisome position: 16.79

GC content: 28.45

Gene sequence:

>471_bases
ATGAGTTCAAATAAAATTAATAAAAAGTCGATTGCACGTATTGCAGCAGTGCAAGCTATTTATCAAAACATATTGCAAAA
TAACGACGATATGGATGATATCATGCAAAATGTACTTTCTTTTTATCAAAATAATAATTCTATAACAGATTTACCTGAGA
ATTTAAAAATATCATTAAGTATAAGTCATTTTAAAATGCTGGTAAAGTCAGTATTTGAAAATATTCATAAATTAGACGAA
ATTATCGACAATCATTTAACAAATGATAAAGATCCTGCACATATGCCGATCTTACTCCGAGCTTTATTGCGTGTTAGTAT
ATGTGAGCTATTGTTTTGTCCTACTACGCCTGCTAAAGTAGTAATCAACGAATATACGGACATAGCAAATGATATGTTAA
ATGAGCATGAAATTGGTTTTGTTAATTCTGTATTAGATAAAATAGCAAAAGAGCATATTCGTTTAATTTGA

Upstream 100 bases:

>100_bases
TTATGTTTTTGAATTACTGGATTCCCGCTTTCACGGGAATGACATCACGCCATATCACCTTACGCATTGACGAAAATTAA
ATTTTAAATTTCTTTTCTCT

Downstream 100 bases:

>100_bases
AAAATTGGCTATAAGTACTGTGGTACTCAAGTATTATTAACGGCTTTTGTGCCTCATCTTGTGGATTCCTTGCTCTTTTC
CAGATTAAACTTAGTCTGCT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSVFENIHKLDE
IIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIANDMLNEHEIGFVNSVLDKIAKEHIRLI

Sequences:

>Translated_156_residues
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSVFENIHKLDE
IIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIANDMLNEHEIGFVNSVLDKIAKEHIRLI
>Mature_155_residues
SSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSVFENIHKLDEI
IDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIANDMLNEHEIGFVNSVLDKIAKEHIRLI

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_RICAE (C3PMK2)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002844905.1
- ProteinModelPortal:   C3PMK2
- SMR:   C3PMK2
- GeneID:   7815204
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0195
- OMA:   FKMLVKS
- ProtClustDB:   PRK00202
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17814; Mature: 17683

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEH
ISHFKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VINEYTDIANDMLNEHEIGFVNSVLDKIAKEHIRLI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEH
ISHFKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VINEYTDIANDMLNEHEIGFVNSVLDKIAKEHIRLI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA