| Definition | Rickettsia africae ESF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_012633 |
| Length | 1,278,540 |
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The map label for this gene is virB6-3
Identifier: 229586346
GI number: 229586346
Start: 140419
End: 143319
Strand: Direct
Name: virB6-3
Synonym: RAF_ORF0133
Alternate gene names: NA
Gene position: 140419-143319 (Clockwise)
Preceding gene: 229586345
Following gene: 229586347
Centisome position: 10.98
GC content: 35.78
Gene sequence:
>2901_bases ATGCAGGGTAACTTATTAAAAGTTTTAGGAGTACTTGCTATAGTAGCAACGTTAGTTTGCTTTATTTTTGCAGCACTTGG TATGATAGGAGCAGTAAAAGTCGGTGACAGCTGCTACATGAGATATGCATCGGACGGTCAAGGAGGAGCGGATTCAATAA CCGGTACTATAACCCTTAATGCTAATGCTAATTATGTAAACACTACTAAGATGTTGTCCGACGGCACGACTCTGCTTGTT CCTGATCCTACTCGTTACGGTGAATGGCTAAATACTCAGGTGCTAGTAGAAAACAGCCAACCGGTGAATTTACAAGTGGT CGGTCAGGTTAGTTTGTGTTTAGCTTATATACCGAAAGATAATTTACAACGTACAGGGGCTGGATCTAATTTAGACGATA ACGGTCAAATGATCCCGATTCCTCGTATTAACGATACAAATAATCCACCTGTCTCTCTAATAATGGATGCAAAAAATAAT GAATGGCGTAATATTGCCGAATTATACGCCAATGATAGAGTTTTAGTTTCCGTATCTCCTAATTTTGCCAATACGGATGC GACAGTTAAAGATGCTTTTAAAGGTGCTGAAGTTACGCAAGATTGTTCAGAGAATAAAACTACTTATAATCCAATTTGTG GAAAATATTCTGTTTATTCAGGTAAGTATGTCAATGCTTGCGAGTTAAAAGAGAAATATTGGAATTGTCAAGTCACATGG AGGTGCCCTAACTGGTATGAGCAAGCAGGTTGCGACTGGGGAGCATTGGGCTGTATTGCGTCTTGTCAAAAGATACCAGA ATGTACAACGAAATGTATGGCTTGGGTTAATATAATGAGACCAGCACCAGAAAACTACCTAGATGATGAGAGTTTTACAT TTTCGTGGTCTGACAACACAGGTAAATTATTTATCGACTATTCAGCCCTTCAATGTTCTTATAATGCTAATATTCCTCCA GCTGATCAATGTCCTGATCGTGTTCACGATCGTCGTACAAAAGATAAAGATTATATTGGAGGTGTACATTGTACTTCGGG CATATGTAGCGATGGAGATTTTCAAAAGAATCGGAGATTTTGGTATACGGCGGACGGTAAAGGAGGCAAAGGACCAACTG GATTAATATATCAAATGAATGATGCGGGTTCTGTAAGTCAAGCTCTGCCTTCTAAGCTAGAATTTGCTAAATTTGTTGCA GATACAGATCAACCGCCTGACTATAAAGATAAAGACGGTAAATATTTATATAAAGTTATATATAATATACCTTTTAACAG TGATATTGCAAAAAGTTATTTACAATATAGGCTGTGGTCGCCTACCTCACAAGATAGTAGTAAGAATACGGGAGGATACG TTTTAAATATTAAACAGACTAAATGCTATAGAGAAAACGGTAATAGTTTTAACGATACTTTTGATGATCGAGGACGAGTG CAATACATCATAGTAAAGCCTTCGGAAAACCCGAATACTAGCGGTAAAACCTATTCACCTCAAGGAATTAGCGTTGATAG TGAAGGTAAATATAGCTTTAACGCAAATGAGGCGGGTTATATATGGATGAAAATTCTAAATGATCCTGGTAATAATTTAA GGGACTATAAAGATAGTGAAGGTAGCTATAAAGTACATTTCTCAACATCCTTAAAAGTAGGAAGTTTTTCTATTAAAGTA ATGAATCCGTTACTTCAGTTATTTAAAACTAAAGTGCAAGGGGCTGCTACTTCTATTTTTAAAAATATGGTATGTTATAA AGCTAATGATAGTTCGTCCTGTACTAACTTTTTTACCTATATTAAAGCAATTTTAATTCTGTATGTGATGACTTACGGAG CAATGTTTTTACTTGGTTTTGCTAAGATAAACCAAAAAGAGCTAGTAATTAGAATAGCAAAAATCGGGGTAGTTAGCGGA CTGATGAACGGTAATACCTTTGAATTTTTCAATAACTATCTTTTTGATGCAATTACCAATTTTTCAGACTCAATTATTGC TAATATGAGTGGATATAGTTTGTTTACTTCTACTAATACTATTTCTAATCCTTTCATGTTTTTAGATGCAGTAATGAGTA AAATATTTTTTAGTCAAACCTTTATCGCTCAATTACTTGCACTTCTTTCTCTTGGGCTTAGCGGTATTATATATTTTATA ATTACTTTTATTGCGGTTTGTATAGTAATTATTACGGCGCTTAGAGCTGTTGCCGTTTATATTATGGCATTTATGGCAAC TTGTATATTAATCGGTATAGCCCCTTTATTTATTAGTTTCTTATTATTTGATTTTACTAGGTATTTATTTGATAATTGGG TGAGGTTTACGATCCGCTATATGCTGGAACCGGTAGTTATGATGGCAGGTATTATAGTGCTAACACAACTATTTACCATT TATCTAGATTTTGTTTTAGGTTATAGCGTGTGTTGGAAATGTGCTTTACCGATAAAAATTCCGTTTATCGGTACTATTTT ACCTATTGCCTTGCTGAATGTACCTATCTTCTGTATTAATTGGTTTGCCCCTTGGGGAATGGATTATATGTCGGGTATGA TGGGAGTAAATATGCAAAATATCGTAGCTCTAGTTATTATTGCTTACGGTATGTACGGTTATGTCGAATTTTCAGGACGT ATGGTAGTAAAATTAACTAGTGCTGTTGGGCCTTCGGCTACTGAAATTGGTGGTAAAATGTCTCATGATGCAGGACAAAA AGCATTAAGTTCAATAGGAATGGATGATAAAACAAGACAAGGTATTACCGGCAGAGCGGAAGCACGATTAAAACAACGCA ATAAGACATTAGATCAGGCTGAGAAAAATAGGAAAAATACGCCAAAAGAAGGGGGCGAGAAGACAAATGAAGAACCACCT AAACCTGAAACACCGAAATAG
Upstream 100 bases:
>100_bases GTTGGTAGGAGATAAGCCGGGTGTTGGAGGTAAGCGTAAAGAGGGAGAGCAGCAAGGCAGGGATTTAGCAAGCGGTTCGG GTGGAGGTAAATGATAGAAT
Downstream 100 bases:
>100_bases AGGGTGAATCGAAAATCGTCATTGCGAGGAAATTATGAAATAATTGACAAAGCAATCTCAGGAGTTATTTCATGAGATTG CCGCGCAGCCATACAGCTGC
Product: VirB6
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 966; Mature: 966
Protein sequence:
>966_residues MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLNANANYVNTTKMLSDGTTLLV PDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKDNLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNN EWRNIAELYANDRVLVSVSPNFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNTGKLFIDYSALQCSYNANIPP ADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVA DTDQPPDYKDKDGKYLYKVIYNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFSIKV MNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSG LMNGNTFEFFNNYLFDAITNFSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMLEPVVMMAGIIVLTQLFTI YLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGR MVVKLTSAVGPSATEIGGKMSHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP KPETPK
Sequences:
>Translated_966_residues MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLNANANYVNTTKMLSDGTTLLV PDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKDNLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNN EWRNIAELYANDRVLVSVSPNFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNTGKLFIDYSALQCSYNANIPP ADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVA DTDQPPDYKDKDGKYLYKVIYNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFSIKV MNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSG LMNGNTFEFFNNYLFDAITNFSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMLEPVVMMAGIIVLTQLFTI YLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGR MVVKLTSAVGPSATEIGGKMSHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP KPETPK >Mature_966_residues MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLNANANYVNTTKMLSDGTTLLV PDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKDNLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNN EWRNIAELYANDRVLVSVSPNFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNTGKLFIDYSALQCSYNANIPP ADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVA DTDQPPDYKDKDGKYLYKVIYNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFSIKV MNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSG LMNGNTFEFFNNYLFDAITNFSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMLEPVVMMAGIIVLTQLFTI YLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGR MVVKLTSAVGPSATEIGGKMSHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP KPETPK
Specific function: Unknown
COG id: COG3704
COG function: function code U; Type IV secretory pathway, VirB6 components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbL/virB6 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007688 [H]
Pfam domain/function: PF04610 TrbL [H]
EC number: NA
Molecular weight: Translated: 107365; Mature: 107365
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHEEEECCCCCCCCCCEEEEEEEC ANANYVNTTKMLSDGTTLLVPDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKD CCCCEEEHHHEECCCCEEEECCCHHHCCCCCCEEEEECCCCCEEEEECHHEEHHEECCCC NLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNNEWRNIAELYANDRVLVSVSP CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECC NFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW CCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEEE RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNT ECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC GKLFIDYSALQCSYNANIPPADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRF CEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHCCCEEECCCCCCCCCCCCCCEE WYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVADTDQPPDYKDKDGKYLYKVI EEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE YNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCE QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSE EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCC GSYKVHFSTSLKVGSFSIKVMNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTY CCEEEEEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH IKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSGLMNGNTFEFFNNYLFDAITN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC FSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI CCHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLEPVVMMAGIIVLTQLFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCEEEE WFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGRMVVKLTSAVGPSATEIGGKM CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHCCCC SHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP CHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC KPETPK CCCCCC >Mature Secondary Structure MQGNLLKVLGVLAIVATLVCFIFAALGMIGAVKVGDSCYMRYASDGQGGADSITGTITLN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHEEEECCCCCCCCCCEEEEEEEC ANANYVNTTKMLSDGTTLLVPDPTRYGEWLNTQVLVENSQPVNLQVVGQVSLCLAYIPKD CCCCEEEHHHEECCCCEEEECCCHHHCCCCCCEEEEECCCCCEEEEECHHEEHHEECCCC NLQRTGAGSNLDDNGQMIPIPRINDTNNPPVSLIMDAKNNEWRNIAELYANDRVLVSVSP CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECC NFANTDATVKDAFKGAEVTQDCSENKTTYNPICGKYSVYSGKYVNACELKEKYWNCQVTW CCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEEE RCPNWYEQAGCDWGALGCIASCQKIPECTTKCMAWVNIMRPAPENYLDDESFTFSWSDNT ECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC GKLFIDYSALQCSYNANIPPADQCPDRVHDRRTKDKDYIGGVHCTSGICSDGDFQKNRRF CEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHCCCEEECCCCCCCCCCCCCCEE WYTADGKGGKGPTGLIYQMNDAGSVSQALPSKLEFAKFVADTDQPPDYKDKDGKYLYKVI EEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE YNIPFNSDIAKSYLQYRLWSPTSQDSSKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRV EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCE QYIIVKPSENPNTSGKTYSPQGISVDSEGKYSFNANEAGYIWMKILNDPGNNLRDYKDSE EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCC GSYKVHFSTSLKVGSFSIKVMNPLLQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTY CCEEEEEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH IKAILILYVMTYGAMFLLGFAKINQKELVIRIAKIGVVSGLMNGNTFEFFNNYLFDAITN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC FSDSIIANMSGYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFI CCHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLEPVVMMAGIIVLTQLFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCEEEE WFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGRMVVKLTSAVGPSATEIGGKM CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHCCCC SHDAGQKALSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPP CHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC KPETPK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]