Click here to switch to the map view.

The map label for this gene is 229586262

Identifier: 229586262

GI number: 229586262

Start: 39932

End: 40363

Strand: Direct

Name: 229586262

Synonym: RAF_ORF0040

Alternate gene names: NA

Gene position: 39932-40363 (Clockwise)

Preceding gene: 229586256

Following gene: 229586264

Centisome position: 3.12

GC content: 26.39

Gene sequence:

>432_bases
ATGAGAAATAATAAAAACCAAATGTATATTATAAAAATTTTTATAGCCCTAGCTATGATTACGGGCATAATATTTTTATG
TTTATTGTATTCTTCATTAACTCCGTCTAAGCTTAAGATTGGTGCGAAAACTAGTAATATGGACGATTCGCCTAAAATTA
AGTTTACTCTTATAGATCAAGAAGGAAAGAAATTTGATAGTACCCATTTGCAAGGTCATTTAAGTTTGATTTATTTTGGT
ACTACCTATTCCTTATATGACAATCAAACACTAAAAAGAGTAGAAGATATTATTAAGATTTTGAAGAAAGAGAATATTTT
AGTACAAGTAGTTTTTATTACTCTAGATTCTGAGCATGATACAAGTGAAGTATTAAAAAAATATTTAGAAAAAATAGATG
ATAATTTTATAGGTTTAACAGGGAGAGTCTAA

Upstream 100 bases:

>100_bases
ATATCACAATTTAGATATTACGATATTTAATATACTGAAAGATGATTTTTATTGCATATATGATAAGAATAAGTTTTATT
ATTAATAATTACTTATGGTT

Downstream 100 bases:

>100_bases
GATATTGAACAATTAGCAGATCAATTTAAGGTCTTCTATACATCCAAAATATTTGATGTAAAAACAAACAAATATGAATT
ACAACATTCTAATTTTGTGT

Product: Sco2 protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRNNKNQMYIIKIFIALAMITGIIFLCLLYSSLTPSKLKIGAKTSNMDDSPKIKFTLIDQEGKKFDSTHLQGHLSLIYFG
TTYSLYDNQTLKRVEDIIKILKKENILVQVVFITLDSEHDTSEVLKKYLEKIDDNFIGLTGRV

Sequences:

>Translated_143_residues
MRNNKNQMYIIKIFIALAMITGIIFLCLLYSSLTPSKLKIGAKTSNMDDSPKIKFTLIDQEGKKFDSTHLQGHLSLIYFG
TTYSLYDNQTLKRVEDIIKILKKENILVQVVFITLDSEHDTSEVLKKYLEKIDDNFIGLTGRV
>Mature_143_residues
MRNNKNQMYIIKIFIALAMITGIIFLCLLYSSLTPSKLKIGAKTSNMDDSPKIKFTLIDQEGKKFDSTHLQGHLSLIYFG
TTYSLYDNQTLKRVEDIIKILKKENILVQVVFITLDSEHDTSEVLKKYLEKIDDNFIGLTGRV

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 16410; Mature: 16410

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNKNQMYIIKIFIALAMITGIIFLCLLYSSLTPSKLKIGAKTSNMDDSPKIKFTLIDQ
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEEEECC
EGKKFDSTHLQGHLSLIYFGTTYSLYDNQTLKRVEDIIKILKKENILVQVVFITLDSEHD
CCCCCCCHHCCEEEEEEEEECEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
TSEVLKKYLEKIDDNFIGLTGRV
HHHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MRNNKNQMYIIKIFIALAMITGIIFLCLLYSSLTPSKLKIGAKTSNMDDSPKIKFTLIDQ
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEEEECC
EGKKFDSTHLQGHLSLIYFGTTYSLYDNQTLKRVEDIIKILKKENILVQVVFITLDSEHD
CCCCCCCHHCCEEEEEEEEECEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
TSEVLKKYLEKIDDNFIGLTGRV
HHHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]