Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 227828639

GI number: 227828639

Start: 2221390

End: 2222253

Strand: Direct

Name: dppC [H]

Synonym: M1425_2392

Alternate gene names: 227828639

Gene position: 2221390-2222253 (Clockwise)

Preceding gene: 227828638

Following gene: 227828640

Centisome position: 85.15

GC content: 38.89

Gene sequence:

>864_bases
ATGAACCTAAAGGATATAACCAAAAATATGAACCTAACCGTAGGACTGATTATTATTCTCTCCTTCTTAGCCCTAACAAT
AATTTCTACAGCTGATTTACACATATTAACGCCCTATAATCCAAATCAACTCAATTTCAGCCAAGCTAACTTACCTCCCT
CTTCCAATCACGTCTTCGGTACGGACCAAGAAGGTAGAGATGTTTTTACTAGATCTTTGACGGCTTTACGTATAGACTTC
TCAATACCTTTCCTAATCGTAGGTATCTCGATGCTCATAGGTACAATCATAGGGATTTTAAGCGGATACTTCGGTGGACT
ATTAGATGAGGCTCTAATGAGAATTACAGATATATTCTTAGCATTTCCAGGGATATTATTAGCCTTGGCCATAAGTGAGA
TCTTAGGGAGTACCCATCTATCACTAAGACTTTACTTAAGTGCGTTGGCCTTGGCTATTGTAAATTGGCCGATTTACGCT
AGGTTAGTAAGAGCACAAATCTTGCAAGTAAAGAACATGCAATATATACCCTTAGCGAAGGTAGCTGGGCTAAATAATTT
TCAGATAATAAAAAAGCATATAATCCCACACCTAGTCTCTCTATTATTAGTCTATACTACGTTGGATATGGGCACAATAA
TATTAAATTACTCCATTTTAGCGTTCTTCGGATTAGGAGCTCCACCGCCCACTCCGGAACTGGGGAGAATGGTCTATGAT
GGCCTCTCAGCACTTCCACAAAACTGGTGGTCATCAATATTTCCCGCAATAATCATAACGCTAATGGCCTTAGGCTACTC
ATTAGCAGGAGATGGGTTAAGAGATATATTAGATCCAAGATTAGGTGAAAGGACAAATGTCTAA

Upstream 100 bases:

>100_bases
TAATAGCAGCTACAGTTGTGATAACAATTGTAGTTGTAATATCGAATCTCGTCGCAGACATTTCCTATGCATTATTAGAT
CCTAGGATAAGGGAAGCACT

Downstream 100 bases:

>100_bases
TAAATTACTATCATTGGAGAATTTGTGGATAACTTACTACAAGGGGAATAAATCTGCGTATGCAGTGAGAGGAGTGAGTT
TAGAGGTCAATTACAATCAA

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNLKDITKNMNLTVGLIIILSFLALTIISTADLHILTPYNPNQLNFSQANLPPSSNHVFGTDQEGRDVFTRSLTALRIDF
SIPFLIVGISMLIGTIIGILSGYFGGLLDEALMRITDIFLAFPGILLALAISEILGSTHLSLRLYLSALALAIVNWPIYA
RLVRAQILQVKNMQYIPLAKVAGLNNFQIIKKHIIPHLVSLLLVYTTLDMGTIILNYSILAFFGLGAPPPTPELGRMVYD
GLSALPQNWWSSIFPAIIITLMALGYSLAGDGLRDILDPRLGERTNV

Sequences:

>Translated_287_residues
MNLKDITKNMNLTVGLIIILSFLALTIISTADLHILTPYNPNQLNFSQANLPPSSNHVFGTDQEGRDVFTRSLTALRIDF
SIPFLIVGISMLIGTIIGILSGYFGGLLDEALMRITDIFLAFPGILLALAISEILGSTHLSLRLYLSALALAIVNWPIYA
RLVRAQILQVKNMQYIPLAKVAGLNNFQIIKKHIIPHLVSLLLVYTTLDMGTIILNYSILAFFGLGAPPPTPELGRMVYD
GLSALPQNWWSSIFPAIIITLMALGYSLAGDGLRDILDPRLGERTNV
>Mature_287_residues
MNLKDITKNMNLTVGLIIILSFLALTIISTADLHILTPYNPNQLNFSQANLPPSSNHVFGTDQEGRDVFTRSLTALRIDF
SIPFLIVGISMLIGTIIGILSGYFGGLLDEALMRITDIFLAFPGILLALAISEILGSTHLSLRLYLSALALAIVNWPIYA
RLVRAQILQVKNMQYIPLAKVAGLNNFQIIKKHIIPHLVSLLLVYTTLDMGTIILNYSILAFFGLGAPPPTPELGRMVYD
GLSALPQNWWSSIFPAIIITLMALGYSLAGDGLRDILDPRLGERTNV

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=279, Percent_Identity=37.6344086021505, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1787054, Length=275, Percent_Identity=37.4545454545455, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=39.6078431372549, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=29.9180327868852, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787498, Length=270, Percent_Identity=31.1111111111111, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788505, Length=230, Percent_Identity=28.2608695652174, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787549, Length=245, Percent_Identity=28.1632653061224, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31484; Mature: 31484

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKDITKNMNLTVGLIIILSFLALTIISTADLHILTPYNPNQLNFSQANLPPSSNHVFG
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
TDQEGRDVFTRSLTALRIDFSIPFLIVGISMLIGTIIGILSGYFGGLLDEALMRITDIFL
CCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFPGILLALAISEILGSTHLSLRLYLSALALAIVNWPIYARLVRAQILQVKNMQYIPLAK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VAGLNNFQIIKKHIIPHLVSLLLVYTTLDMGTIILNYSILAFFGLGAPPPTPELGRMVYD
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
GLSALPQNWWSSIFPAIIITLMALGYSLAGDGLRDILDPRLGERTNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNLKDITKNMNLTVGLIIILSFLALTIISTADLHILTPYNPNQLNFSQANLPPSSNHVFG
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
TDQEGRDVFTRSLTALRIDFSIPFLIVGISMLIGTIIGILSGYFGGLLDEALMRITDIFL
CCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFPGILLALAISEILGSTHLSLRLYLSALALAIVNWPIYARLVRAQILQVKNMQYIPLAK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VAGLNNFQIIKKHIIPHLVSLLLVYTTLDMGTIILNYSILAFFGLGAPPPTPELGRMVYD
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
GLSALPQNWWSSIFPAIIITLMALGYSLAGDGLRDILDPRLGERTNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]