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The map label for this gene is nodC [H]

Identifier: 227828601

GI number: 227828601

Start: 2184859

End: 2186298

Strand: Direct

Name: nodC [H]

Synonym: M1425_2354

Alternate gene names: 227828601

Gene position: 2184859-2186298 (Clockwise)

Preceding gene: 227828600

Following gene: 227828602

Centisome position: 83.75

GC content: 33.61

Gene sequence:

>1440_bases
GTGAGTATAAATGAAAAATTAGTGAAAATCTTTTATATTGATGGGTTAATAGTTTATACTCGGACTTATATGAGACTTGA
CATTACATTTTATCTTTTAGTCTCTACCTTGATATCTATTCTTACTATTCTGTACATTTCCTTTACCTTACCTCTAGCAT
TTACGTATAGGCCTAAGTCATCTCAAGCCAGTATAAAAAGAAGTGAAATTACCGTATTGATCCCCGTTTATAAGGAAGAT
GTGGATGTGTTTAAAGAAGTTATAGATTCTGTTAAAAAGCAAGATTTGAAATTTATTGTTGTAGGGGATGGCTGTGATGA
ACCATATAAAAGTATAGTAAGAACAAAGGGAGGTTTGTTCATTAAACTAGATAAGAATATGGGTAAGAGGAGGGCAATAA
GAGAAGGATTCAAATACGTTAAAACCCCATATGTTTTACTTTTAGATAGTGATACAATACTTCCAGATGATTCAGTTGAT
CTCTTATCCTCTAAATTAATAGGGGATATAGTTGCTGTTAGCCCAGAGATTTCGGTATTGCCAGGTAAAAATATAATAGC
TTATCATGTCTCCGAGATGATGCAAAGGTTGAGGGAAATAAGTTATAGGGCGTTAGGTAGATTCGGCAGTATAGTATCAC
TCAACGGCCAATGTATACTAGTAAGAACTGACGTAATAAGGCCGCTGATCGAATCTGAGGAATTTAATAGTGTTAAATTA
TGGAGATTCTCCACAATTTTAGGGGATGACAGGCAGATAACCAATTATATCTATTCAAATGGATATAAGGCAACTGTAAC
TAAGGATGTAGTAGTCAAGACTAAAGCTCCAGATACGATTAGCGGTTTACTAAAGCAAATGGTTAGATGGTATAGATCAA
ATAATTTCTTCTTGATTAAGGAAATAGGTGATGGTACTATCTTTAAAAAGGGTTTCTTTTACATGTTTACAGTATTATAC
TGGTACGCATTACCTTTACTTACGTTACTAAGTTATAGCCTATATACTGAAATAATTTTATCACATGTAGCTAAGCATTG
GGATTTCATTGTAAGAGCAATAATCACAAACCCTACTAAGTTCATAGAGGATGTAATAGTATACAGAATTGATAATTTAT
TTGATATAGATCCCACGCCAATTTTCCATAAATTTAGCCATTTTCTTCCGCATCACTTCAATCCAAGTGGGATTATGTTG
ATTTATGGCAATAAACTGAGTACAGAAATGGTTCTATTTCACTACTTCTATGTTTTTCACACATTTGTGGGTGAAGTGTC
AACAATAGTTAGCATTGTAATGATTGTGTCTATTCTGCTATACACAAGAAGAATAAGGGGATTTGCTTTAGGTTTATTGG
CATTTCCATTAATGTTCTTCGCTGATATATTTGCTCTCATGACAATATGGAGGCAAAAGAAGTGGTCTGGTCGTAGCTGA

Upstream 100 bases:

>100_bases
GACAGTACTTGAATTAGATTTTAAGGTTTTATGGTGTTTTTGGTTCGATATAAATTCAGTATTTATATTCAAGCAAGATA
TAACATAAGGGAGAGTTATA

Downstream 100 bases:

>100_bases
GATTTTAACTCAACACTATTTTTATTCTACTGTTCAGATCCTTAGATAAAACACAAACTTTATACTTTTCTAAACATAGT
AGAGTCGGAGTGAAAGAAAA

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: Nodulation protein C [H]

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MSINEKLVKIFYIDGLIVYTRTYMRLDITFYLLVSTLISILTILYISFTLPLAFTYRPKSSQASIKRSEITVLIPVYKED
VDVFKEVIDSVKKQDLKFIVVGDGCDEPYKSIVRTKGGLFIKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDDSVD
LLSSKLIGDIVAVSPEISVLPGKNIIAYHVSEMMQRLREISYRALGRFGSIVSLNGQCILVRTDVIRPLIESEEFNSVKL
WRFSTILGDDRQITNYIYSNGYKATVTKDVVVKTKAPDTISGLLKQMVRWYRSNNFFLIKEIGDGTIFKKGFFYMFTVLY
WYALPLLTLLSYSLYTEIILSHVAKHWDFIVRAIITNPTKFIEDVIVYRIDNLFDIDPTPIFHKFSHFLPHHFNPSGIML
IYGNKLSTEMVLFHYFYVFHTFVGEVSTIVSIVMIVSILLYTRRIRGFALGLLAFPLMFFADIFALMTIWRQKKWSGRS

Sequences:

>Translated_479_residues
MSINEKLVKIFYIDGLIVYTRTYMRLDITFYLLVSTLISILTILYISFTLPLAFTYRPKSSQASIKRSEITVLIPVYKED
VDVFKEVIDSVKKQDLKFIVVGDGCDEPYKSIVRTKGGLFIKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDDSVD
LLSSKLIGDIVAVSPEISVLPGKNIIAYHVSEMMQRLREISYRALGRFGSIVSLNGQCILVRTDVIRPLIESEEFNSVKL
WRFSTILGDDRQITNYIYSNGYKATVTKDVVVKTKAPDTISGLLKQMVRWYRSNNFFLIKEIGDGTIFKKGFFYMFTVLY
WYALPLLTLLSYSLYTEIILSHVAKHWDFIVRAIITNPTKFIEDVIVYRIDNLFDIDPTPIFHKFSHFLPHHFNPSGIML
IYGNKLSTEMVLFHYFYVFHTFVGEVSTIVSIVMIVSILLYTRRIRGFALGLLAFPLMFFADIFALMTIWRQKKWSGRS
>Mature_478_residues
SINEKLVKIFYIDGLIVYTRTYMRLDITFYLLVSTLISILTILYISFTLPLAFTYRPKSSQASIKRSEITVLIPVYKEDV
DVFKEVIDSVKKQDLKFIVVGDGCDEPYKSIVRTKGGLFIKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDDSVDL
LSSKLIGDIVAVSPEISVLPGKNIIAYHVSEMMQRLREISYRALGRFGSIVSLNGQCILVRTDVIRPLIESEEFNSVKLW
RFSTILGDDRQITNYIYSNGYKATVTKDVVVKTKAPDTISGLLKQMVRWYRSNNFFLIKEIGDGTIFKKGFFYMFTVLYW
YALPLLTLLSYSLYTEIILSHVAKHWDFIVRAIITNPTKFIEDVIVYRIDNLFDIDPTPIFHKFSHFLPHHFNPSGIMLI
YGNKLSTEMVLFHYFYVFHTFVGEVSTIVSIVMIVSILLYTRRIRGFALGLLAFPLMFFADIFALMTIWRQKKWSGRS

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation [H]

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 55369; Mature: 55238

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINEKLVKIFYIDGLIVYTRTYMRLDITFYLLVSTLISILTILYISFTLPLAFTYRPKS
CCCHHHEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCC
SQASIKRSEITVLIPVYKEDVDVFKEVIDSVKKQDLKFIVVGDGCDEPYKSIVRTKGGLF
CCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEE
IKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDDSVDLLSSKLIGDIVAVSPEISVL
EEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEECCCEEEC
PGKNIIAYHVSEMMQRLREISYRALGRFGSIVSLNGQCILVRTDVIRPLIESEEFNSVKL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHCCCCCCCEEE
WRFSTILGDDRQITNYIYSNGYKATVTKDVVVKTKAPDTISGLLKQMVRWYRSNNFFLIK
EEEEEHHCCCHHHHHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE
EIGDGTIFKKGFFYMFTVLYWYALPLLTLLSYSLYTEIILSHVAKHWDFIVRAIITNPTK
ECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
FIEDVIVYRIDNLFDIDPTPIFHKFSHFLPHHFNPSGIMLIYGNKLSTEMVLFHYFYVFH
HHHHHHHHHHCCEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
TFVGEVSTIVSIVMIVSILLYTRRIRGFALGLLAFPLMFFADIFALMTIWRQKKWSGRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SINEKLVKIFYIDGLIVYTRTYMRLDITFYLLVSTLISILTILYISFTLPLAFTYRPKS
CCHHHEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCC
SQASIKRSEITVLIPVYKEDVDVFKEVIDSVKKQDLKFIVVGDGCDEPYKSIVRTKGGLF
CCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEE
IKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDDSVDLLSSKLIGDIVAVSPEISVL
EEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEECCCEEEC
PGKNIIAYHVSEMMQRLREISYRALGRFGSIVSLNGQCILVRTDVIRPLIESEEFNSVKL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHCCCCCCCEEE
WRFSTILGDDRQITNYIYSNGYKATVTKDVVVKTKAPDTISGLLKQMVRWYRSNNFFLIK
EEEEEHHCCCHHHHHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE
EIGDGTIFKKGFFYMFTVLYWYALPLLTLLSYSLYTEIILSHVAKHWDFIVRAIITNPTK
ECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
FIEDVIVYRIDNLFDIDPTPIFHKFSHFLPHHFNPSGIMLIYGNKLSTEMVLFHYFYVFH
HHHHHHHHHHCCEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
TFVGEVSTIVSIVMIVSILLYTRRIRGFALGLLAFPLMFFADIFALMTIWRQKKWSGRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2615763; 8146173 [H]