| Definition | Sulfolobus islandicus M.14.25 chromosome, complete genome. |
|---|---|
| Accession | NC_012588 |
| Length | 2,608,832 |
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The map label for this gene is galS [H]
Identifier: 227828490
GI number: 227828490
Start: 2046901
End: 2048847
Strand: Direct
Name: galS [H]
Synonym: M1425_2239
Alternate gene names: 227828490
Gene position: 2046901-2048847 (Clockwise)
Preceding gene: 227828488
Following gene: 227828492
Centisome position: 78.46
GC content: 36.26
Gene sequence:
>1947_bases ATGATGATTTGGATAGAAGACGAGAGTGGGAATAAATATCAGTGTGATAGTAACGGAAATTGCGAAAACTTAGCAATAGT TAAGGTTCATACAAAGGAGTATAATAAGGAGGGAAAGATATACAGCGTCGAGGCAAAGTCATTTGTGAAACTATCTAAAT TTCCCATTACGTTAAAGCTCGATTTAAAGAGTGATCAAATTCTCTCATTTACAACTCAACAAATCTATTCAGAAGTCTAC GGGAAAGCTTTTGCATACTATAACCAATTGGCAATTGATATGGAACCTGTAACTGAACCTCCGAAGGAGGTTAAATACGA GATTAGAAGTCTAGATCATGAGAAGTACATAAGGACTTATCCATGTTGGCTTTATCCCGTCTTCAATACAATTCCAGATT ACAGTGTTTTCGCATTAGTCAAGAGTGGAAATTCTTATCAGTCTTTATTTACACTTTCCAACAATTACGTTACGGCGTAT CTCTTTAACGATTCAGTTAAAATCTACTCTGGTATTAATACTGATGAAATTAGGAAGAGCTATTTTCTCTCTATAGGTAC TTCGGATAATCCATATAAGGCAATTGAGAATGCAATTAGTATTGCATCTAAGGAAACTCATACCTTCAAGCTAAGAAAGG AAAAGGACTTACCACATAAGGTCATGAGTGGGCTAGGGTGGTGTAGTTGGAACGCGTTTTTAACTAAGGATCTTAATGAG GAGAATTTAATCAAAGTAGTAAAGGGAATAATGGAAAGGGTAAGATTAAGTTGGGTAATAATAGATGATGGATGGCAAGA CCAAAATAACGACAGGGCAATAATGAGTTTAAAGCCAGATAATAAGAAGTTCCCAAGTGGCTTCAGAAATACTGTAAGCT CGTTAAAGTCAATTGGCGTTAAGTACGTTGGTTTATGGCATACAATAAATACCCATTGGGGAGGAATGACTCAAGAGTTT ATGAAGTCACTCGACGTAAAGGGACATTTTACCAATTTCCTCAATAGTTATGTGCCTCCACCAAATCTTGAGGATGCAAT AGATTTCTATAAGGTCTTTGATGGGAATATCTTAAGGGATTTCGATCTTGTTAAAGTTGATAATCAATGGGTAATTCACG CCCTATATGATGGTTTTCCAATAGGTCTAGCTAGTAGGAATGTCCAACTCGCTTTGCAATATGCAGTAGGGAAAGACGTT ATAAATTGCATGTCGATGAACCCAGAAAATTACTGTAATTACTTTTATAGTAATGTAATGAGGAATTCTATCGATTACGT ACCCTTCTGGAAGGACGGAGCGAAACTTCACGTTATGTTCAATGCGTACAACTCCTTAGTGATCTCTCATATAGTTTATC CAGATTATGACATGTTCATGTCTTATGATCCTTATGCAAAGGTTCACTTAGTTGCAAGGGTTTTCAGTGGAGGACCACTT TATATTACGGATAGGCATCCAGAGAAGATGAACGTTGAATTGTTAAAAATGGCGGTTCTTCCAAATGGTGAAGTTGTTAG AGTGGATGAGCCGGGGTTAATAACTGAGGATTTATTGTTCAAAGATCCATTAAGAGAAAAGGTTTTGTTGAAGATGAGGA GTAAGGTCAAAGGGTATAACGCTATTGCATTCTTTAACCTAAACGATGAAGATGTAGAGGAGGAGTATAATAATAATGAG GACTATTACTATTACAAGGTATTTTCTAGGGAATTTGGAGTAGGTAACTTTAATGTTAAGCTAAGAGAACTCGATGCTGA GATCGCTATCACTTTTCCGAAGAGTAACAAAGTTATAGGTTTAAGAGAATACATTTTACCACCATTTACTGTAATAGCTA GCAATAACGTAGTGATTCCTAGGGCAGATGGTACATTACTATATGTTAAAGACTTTAAACTAAACGAAGTTAAGGTGAGG GAGGGAATACCAGCTATTATAGAATAG
Upstream 100 bases:
>100_bases AGGCTTTATAAGTTTTATTTCATATACTCTTAACATACTAGGTTTTATTTGCTTTTAACTGGTTAAGTTAAAGTACTTAT ATGTAATATTGATTATTATT
Downstream 100 bases:
>100_bases GGTGAGATTTATTTTGGACAATAATATAATTTCTACGTGAATGAGTTTTCTCAAATGTTCATGGGAGATATCCCTTAAAG AGAACATTCTCGTAAAATTT
Product: raffinose synthase
Products: NA
Alternate protein names: Alpha-Gal [H]
Number of amino acids: Translated: 648; Mature: 648
Protein sequence:
>648_residues MMIWIEDESGNKYQCDSNGNCENLAIVKVHTKEYNKEGKIYSVEAKSFVKLSKFPITLKLDLKSDQILSFTTQQIYSEVY GKAFAYYNQLAIDMEPVTEPPKEVKYEIRSLDHEKYIRTYPCWLYPVFNTIPDYSVFALVKSGNSYQSLFTLSNNYVTAY LFNDSVKIYSGINTDEIRKSYFLSIGTSDNPYKAIENAISIASKETHTFKLRKEKDLPHKVMSGLGWCSWNAFLTKDLNE ENLIKVVKGIMERVRLSWVIIDDGWQDQNNDRAIMSLKPDNKKFPSGFRNTVSSLKSIGVKYVGLWHTINTHWGGMTQEF MKSLDVKGHFTNFLNSYVPPPNLEDAIDFYKVFDGNILRDFDLVKVDNQWVIHALYDGFPIGLASRNVQLALQYAVGKDV INCMSMNPENYCNYFYSNVMRNSIDYVPFWKDGAKLHVMFNAYNSLVISHIVYPDYDMFMSYDPYAKVHLVARVFSGGPL YITDRHPEKMNVELLKMAVLPNGEVVRVDEPGLITEDLLFKDPLREKVLLKMRSKVKGYNAIAFFNLNDEDVEEEYNNNE DYYYYKVFSREFGVGNFNVKLRELDAEIAITFPKSNKVIGLREYILPPFTVIASNNVVIPRADGTLLYVKDFKLNEVKVR EGIPAIIE
Sequences:
>Translated_648_residues MMIWIEDESGNKYQCDSNGNCENLAIVKVHTKEYNKEGKIYSVEAKSFVKLSKFPITLKLDLKSDQILSFTTQQIYSEVY GKAFAYYNQLAIDMEPVTEPPKEVKYEIRSLDHEKYIRTYPCWLYPVFNTIPDYSVFALVKSGNSYQSLFTLSNNYVTAY LFNDSVKIYSGINTDEIRKSYFLSIGTSDNPYKAIENAISIASKETHTFKLRKEKDLPHKVMSGLGWCSWNAFLTKDLNE ENLIKVVKGIMERVRLSWVIIDDGWQDQNNDRAIMSLKPDNKKFPSGFRNTVSSLKSIGVKYVGLWHTINTHWGGMTQEF MKSLDVKGHFTNFLNSYVPPPNLEDAIDFYKVFDGNILRDFDLVKVDNQWVIHALYDGFPIGLASRNVQLALQYAVGKDV INCMSMNPENYCNYFYSNVMRNSIDYVPFWKDGAKLHVMFNAYNSLVISHIVYPDYDMFMSYDPYAKVHLVARVFSGGPL YITDRHPEKMNVELLKMAVLPNGEVVRVDEPGLITEDLLFKDPLREKVLLKMRSKVKGYNAIAFFNLNDEDVEEEYNNNE DYYYYKVFSREFGVGNFNVKLRELDAEIAITFPKSNKVIGLREYILPPFTVIASNNVVIPRADGTLLYVKDFKLNEVKVR EGIPAIIE >Mature_648_residues MMIWIEDESGNKYQCDSNGNCENLAIVKVHTKEYNKEGKIYSVEAKSFVKLSKFPITLKLDLKSDQILSFTTQQIYSEVY GKAFAYYNQLAIDMEPVTEPPKEVKYEIRSLDHEKYIRTYPCWLYPVFNTIPDYSVFALVKSGNSYQSLFTLSNNYVTAY LFNDSVKIYSGINTDEIRKSYFLSIGTSDNPYKAIENAISIASKETHTFKLRKEKDLPHKVMSGLGWCSWNAFLTKDLNE ENLIKVVKGIMERVRLSWVIIDDGWQDQNNDRAIMSLKPDNKKFPSGFRNTVSSLKSIGVKYVGLWHTINTHWGGMTQEF MKSLDVKGHFTNFLNSYVPPPNLEDAIDFYKVFDGNILRDFDLVKVDNQWVIHALYDGFPIGLASRNVQLALQYAVGKDV INCMSMNPENYCNYFYSNVMRNSIDYVPFWKDGAKLHVMFNAYNSLVISHIVYPDYDMFMSYDPYAKVHLVARVFSGGPL YITDRHPEKMNVELLKMAVLPNGEVVRVDEPGLITEDLLFKDPLREKVLLKMRSKVKGYNAIAFFNLNDEDVEEEYNNNE DYYYYKVFSREFGVGNFNVKLRELDAEIAITFPKSNKVIGLREYILPPFTVIASNNVVIPRADGTLLYVKDFKLNEVKVR EGIPAIIE
Specific function: Involved in the degradation of various alpha-linked galactosides such as raffinose, stachyose and melibiose [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR017853 - InterPro: IPR008811 [H]
Pfam domain/function: PF05691 Raffinose_syn [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 74798; Mature: 74798
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMIWIEDESGNKYQCDSNGNCENLAIVKVHTKEYNKEGKIYSVEAKSFVKLSKFPITLKL CEEEEEECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCEEEECCHHEEEEECCCEEEEE DLKSDQILSFTTQQIYSEVYGKAFAYYNQLAIDMEPVTEPPKEVKYEIRSLDHEKYIRTY ECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHHHEEC PCWLYPVFNTIPDYSVFALVKSGNSYQSLFTLSNNYVTAYLFNDSVKIYSGINTDEIRKS CEEEEEHHHCCCCCEEEEEEECCCCEEEEEEEECCEEEEEEEECCEEEEECCCHHHHCEE YFLSIGTSDNPYKAIENAISIASKETHTFKLRKEKDLPHKVMSGLGWCSWNAFLTKDLNE EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEECCEEEECCCCH ENLIKVVKGIMERVRLSWVIIDDGWQDQNNDRAIMSLKPDNKKFPSGFRNTVSSLKSIGV HHHHHHHHHHHHHHEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCE KYVGLWHTINTHWGGMTQEFMKSLDVKGHFTNFLNSYVPPPNLEDAIDFYKVFDGNILRD EEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEC FDLVKVDNQWVIHALYDGFPIGLASRNVQLALQYAVGKDVINCMSMNPENYCNYFYSNVM EEEEEECCCEEEEEEECCEEECEECCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHH RNSIDYVPFWKDGAKLHVMFNAYNSLVISHIVYPDYDMFMSYDPYAKVHLVARVFSGGPL HCCCCCCEEECCCCEEEEEEECHHHHHHHHEECCCHHHEECCCCCHHEEEEEEHHCCCCE YITDRHPEKMNVELLKMAVLPNGEVVRVDEPGLITEDLLFKDPLREKVLLKMRSKVKGYN EEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCE AIAFFNLNDEDVEEEYNNNEDYYYYKVFSREFGVGNFNVKLRELDAEIAITFPKSNKVIG EEEEEECCHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEECCCCCEEE LREYILPPFTVIASNNVVIPRADGTLLYVKDFKLNEVKVREGIPAIIE EHHHCCCCEEEEECCCEEEECCCCEEEEEEECCCCEEEECCCCCHHCC >Mature Secondary Structure MMIWIEDESGNKYQCDSNGNCENLAIVKVHTKEYNKEGKIYSVEAKSFVKLSKFPITLKL CEEEEEECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCEEEECCHHEEEEECCCEEEEE DLKSDQILSFTTQQIYSEVYGKAFAYYNQLAIDMEPVTEPPKEVKYEIRSLDHEKYIRTY ECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHHHEEC PCWLYPVFNTIPDYSVFALVKSGNSYQSLFTLSNNYVTAYLFNDSVKIYSGINTDEIRKS CEEEEEHHHCCCCCEEEEEEECCCCEEEEEEEECCEEEEEEEECCEEEEECCCHHHHCEE YFLSIGTSDNPYKAIENAISIASKETHTFKLRKEKDLPHKVMSGLGWCSWNAFLTKDLNE EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEECCEEEECCCCH ENLIKVVKGIMERVRLSWVIIDDGWQDQNNDRAIMSLKPDNKKFPSGFRNTVSSLKSIGV HHHHHHHHHHHHHHEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCE KYVGLWHTINTHWGGMTQEFMKSLDVKGHFTNFLNSYVPPPNLEDAIDFYKVFDGNILRD EEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEC FDLVKVDNQWVIHALYDGFPIGLASRNVQLALQYAVGKDVINCMSMNPENYCNYFYSNVM EEEEEECCCEEEEEEECCEEECEECCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHH RNSIDYVPFWKDGAKLHVMFNAYNSLVISHIVYPDYDMFMSYDPYAKVHLVARVFSGGPL HCCCCCCEEECCCCEEEEEEECHHHHHHHHEECCCHHHEECCCCCHHEEEEEEHHCCCCE YITDRHPEKMNVELLKMAVLPNGEVVRVDEPGLITEDLLFKDPLREKVLLKMRSKVKGYN EEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCE AIAFFNLNDEDVEEEYNNNEDYYYYKVFSREFGVGNFNVKLRELDAEIAITFPKSNKVIG EEEEEECCHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEECCCCCEEE LREYILPPFTVIASNNVVIPRADGTLLYVKDFKLNEVKVREGIPAIIE EHHHCCCCEEEEECCCEEEECCCCEEEEEEECCCCEEEECCCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11427726 [H]