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The map label for this gene is rpl30e [H]

Identifier: 227828176

GI number: 227828176

Start: 1758017

End: 1758334

Strand: Direct

Name: rpl30e [H]

Synonym: M1425_1914

Alternate gene names: 227828176

Gene position: 1758017-1758334 (Clockwise)

Preceding gene: 227828175

Following gene: 227828177

Centisome position: 67.39

GC content: 33.65

Gene sequence:

>318_bases
GTGTCAGAACAACAAGTTTCATTTGAAGGAGAGTTGAAATCTCTTTTAAAGACGGGTAAAGTTATTTTTGGTGCCAAGAG
AGCTATAAAATACATAAAATTAAGTAAAGTGAAGATGGTAATTGTCGCATCAACATTAAGAGGAGATCTTAAGCAAGATA
TATTGCATTATGCAAAGCTATCTAACGTACCCGTATATGAGTATAAAGGTAGTGGTTGGGATCTTGGAACACTATGTGGC
AAACCATTTATGATTTCCACAATAAGCATTATTGATGAGGGAAATTCCAAAATTTTGGATATTATAAAGGAGAGGTGA

Upstream 100 bases:

>100_bases
ATTTAAAGGTGTAGTAGAAAACATTATAATTGGCCATCCGATTAAACTAGGTACCGGAATGGTTGAATTAACAATGAGGC
CGATATTAAGGTGATAAAAA

Downstream 100 bases:

>100_bases
TTTTTTCTGCCAGAAATTAAATTAACTCCAGAGGAAATACGTTATATTTCTCTGTTTCAAGAAGTAACGAGAGCCAACGT
AAGAGATTGTATAATCGATA

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDILHYAKLSNVPVYEYKGSGWDLGTLCG
KPFMISTISIIDEGNSKILDIIKER

Sequences:

>Translated_105_residues
MSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDILHYAKLSNVPVYEYKGSGWDLGTLCG
KPFMISTISIIDEGNSKILDIIKER
>Mature_104_residues
SEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDILHYAKLSNVPVYEYKGSGWDLGTLCGK
PFMISTISIIDEGNSKILDIIKER

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family [H]

Homologues:

Organism=Homo sapiens, GI4506631, Length=99, Percent_Identity=36.3636363636364, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6321408, Length=100, Percent_Identity=33, Blast_Score=60, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17864264, Length=93, Percent_Identity=37.6344086021505, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24585096, Length=93, Percent_Identity=37.6344086021505, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 11722; Mature: 11591

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00709 RIBOSOMAL_L30E_1 ; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDILHYAKL
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHH
SNVPVYEYKGSGWDLGTLCGKPFMISTISIIDEGNSKILDIIKER
CCCCEEEECCCCCCHHHHCCCCCCEEEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure 
SEQQVSFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDILHYAKL
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHH
SNVPVYEYKGSGWDLGTLCGKPFMISTISIIDEGNSKILDIIKER
CCCCEEEECCCCCCHHHHCCCCCCEEEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]