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The map label for this gene is ygcF [H]

Identifier: 227827777

GI number: 227827777

Start: 1411837

End: 1412463

Strand: Direct

Name: ygcF [H]

Synonym: M1425_1509

Alternate gene names: 227827777

Gene position: 1411837-1412463 (Clockwise)

Preceding gene: 227827776

Following gene: 227827779

Centisome position: 54.12

GC content: 36.36

Gene sequence:

>627_bases
ATGAAGTATCGCGTAATTGAAATCTTTACCTCTGTTCAAGGTGAAGGTGAGGTCATCGGGACTCCTTCAAATTTCATTAG
ACTCGCCACGTGCAATTTAAGATGTGTATGGTGTGATACAAAGTACTCGTGGGAAATTGGCACTGAGATGACCATAGATG
AGATTATTGCAAAAATAGATAAGAAAATTAGAACTACCACTATAACTGGGGGAGAGCCTTTACTCCAAAACGTAGTGCCA
CTTGCTAAGGAACTTAAGAGTATTGGGCATAAGATTGTGATTGAAACAAACGGTACAATAAAGCCTTCAGAGGAATTAAG
GAAGATTATTGATGTATTTTCAGTTTCTCCTAAGCTTAGTAATTCTGGGCATAAACTAAAATACGACTTCTCAGACGATT
GGGCTACATACTATAAGTTTGTTATAGTTTATCCAAACAAGGATATAGATGAGGTCATTAAATTCGTTGAATCTCAGAAT
ATTAACCCACGTAAAGTTATCCTACAACCTGATGGGAATAGAAGTGATTATATAAATGCAATAAATGAAATAGTGCAAAT
TGTGTTAGATAGGGGTCTTCAGTTTAGAGTCCTTCCCCAGCTCCATAGAATTATTGGAGTTAGATGA

Upstream 100 bases:

>100_bases
AAAGAAGGAAGTAAATGGTATGAAATAAGTGCTGAAAAGGGAATAGGTTTAGACAAGTTAAAAGAAGAGCTTTTTAGCTT
GATAAAGAGTAGTGGTACAA

Downstream 100 bases:

>100_bases
TAGTAAGTCTTTCAATAGATTCATCTTTTGTTTCCCTCTTGCTAACACTTCGTTACTTACATTTACTAATGTTTTTATTT
TCTCCTTATCAACCATTTCC

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNLRCVWCDTKYSWEIGTEMTIDEIIAKIDKKIRTTTITGGEPLLQNVVP
LAKELKSIGHKIVIETNGTIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQN
INPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR

Sequences:

>Translated_208_residues
MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNLRCVWCDTKYSWEIGTEMTIDEIIAKIDKKIRTTTITGGEPLLQNVVP
LAKELKSIGHKIVIETNGTIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQN
INPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR
>Mature_208_residues
MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNLRCVWCDTKYSWEIGTEMTIDEIIAKIDKKIRTTTITGGEPLLQNVVP
LAKELKSIGHKIVIETNGTIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQN
INPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=233, Percent_Identity=28.755364806867, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23781; Mature: 23781

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNLRCVWCDTKYSWEIGTEMTIDEIIAKID
CCEEEEEEEECCCCCCCEEECCCCEEEEEEEEEEEEEECCCCCEECCCCCCHHHHHHHHH
KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGTIKPSEELRKIIDVFSVSPKLS
HHHEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
NSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQNINPRKVILQPDGNRSDYINA
CCCCEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
INEIVQIVLDRGLQFRVLPQLHRIIGVR
HHHHHHHHHHCCCCEEEHHHHHHHHCCC
>Mature Secondary Structure
MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNLRCVWCDTKYSWEIGTEMTIDEIIAKID
CCEEEEEEEECCCCCCCEEECCCCEEEEEEEEEEEEEECCCCCEECCCCCCHHHHHHHHH
KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGTIKPSEELRKIIDVFSVSPKLS
HHHEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
NSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQNINPRKVILQPDGNRSDYINA
CCCCEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
INEIVQIVLDRGLQFRVLPQLHRIIGVR
HHHHHHHHHHCCCCEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]