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The map label for this gene is rpl4lp

Identifier: 227827692

GI number: 227827692

Start: 1341049

End: 1341852

Strand: Direct

Name: rpl4lp

Synonym: M1425_1421

Alternate gene names: 227827692

Gene position: 1341049-1341852 (Clockwise)

Preceding gene: 227827691

Following gene: 227827693

Centisome position: 51.4

GC content: 37.94

Gene sequence:

>804_bases
ATGTATTTAGAACTAGTTAAGAAAAACTCTGTGATTTTAGATAAAGATGGAAATAAGGTAAAAGAGGTAGAGTTACCTTT
CATTTTTTCGTTTCCGGTAAGAAAAGATATAATAAGAAGAGTATTTTTAGCAGAGTTTACACATTCTCTGCAACCAAAAG
GCAGAGATCCTATGGCAGGCAAAAGAACATCAGCTGAGAGTTTTGGAATAAATCTAGGTATGGCCAGAGTTCCTAGAGTT
AAAAACTCTGGAGAAGCTGCCTTAGCACCTAATACCGTAGGTGGTAGGTTAACATTTCCGCCTTCGGTAGACAAAAAGCT
TGTAGAAGAGGTGAACGATAAGGAGAAACAATTGGCAGTAATTAGTGCGTTAAGCGCTACAGCAGACACAGTTTTCGTTA
AGGCTAGGGGACATGTATTTAAAGATTCAGTAAGTTTTCCTATAGTAGTAACTGATGATATCGTTAGTTTAAAAACTGCA
AGCGAGGTTGAAGAATTTTTAGAGAAGATAGGTGTTTATGATGATGTAAAGAGAGTAAAAGAGAGGATTAGGATAAGGGC
TGGAAAGGGCAAAATGAGGGGTAGAAAATATAAGGAACCAATAGGCCCACTAATAATAGTACACGACAGTAATTCTCCAA
TAGTTAAGGCAGCACGAAACATAGCTGGAGTTGACGTAGTTAACGCTAAAGATGTAAGCGTTATTCATCTGGCTCCAGGT
GCACATCCAGGCAGGCTTACTATTTATACTGAAACTAGCATAAAGATTTTAGATGAGCGATTGAGTAAGAGGTTGGTGAG
TTAG

Upstream 100 bases:

>100_bases
GCCGATATTCTTAAGAGAGGCTGTTAGACCTTCTTATGTTTTTGAAAACGCTCCTAAGATAACTTATGTTAACCTTTTAA
GTAAGCAAGGGTGAAAGTAA

Downstream 100 bases:

>100_bases
AATGATTCAAATGGCTTTAGCTACAGAGAAAGCATTAAAACTTATTGAGTCCTATAATACACTTACATTAATAGTAGATA
AGAGTGATACAAGGGATGAC

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MYLELVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV
KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTA
SEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG
AHPGRLTIYTETSIKILDERLSKRLVS

Sequences:

>Translated_267_residues
MYLELVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV
KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTA
SEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG
AHPGRLTIYTETSIKILDERLSKRLVS
>Mature_267_residues
MYLELVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV
KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTA
SEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG
AHPGRLTIYTETSIKILDERLSKRLVS

Specific function: Forms part of the polypeptide exit tunnel

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family

Homologues:

Organism=Homo sapiens, GI16579885, Length=255, Percent_Identity=36.8627450980392, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17508669, Length=244, Percent_Identity=35.655737704918, Blast_Score=160, Evalue=6e-40,
Organism=Saccharomyces cerevisiae, GI6319505, Length=240, Percent_Identity=37.5, Blast_Score=142, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6320215, Length=240, Percent_Identity=37.5, Blast_Score=142, Evalue=6e-35,
Organism=Drosophila melanogaster, GI24650747, Length=246, Percent_Identity=32.520325203252, Blast_Score=151, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL4_SULIA (C3N5S8)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843398.1
- GeneID:   7814237
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1471
- OMA:   KMRGRRY
- ProtClustDB:   PRK04042
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01328_A
- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970
- TIGRFAMs:   TIGR03672

Pfam domain/function: PF00573 Ribosomal_L4; SSF52166 Ribosomal_L4/L1E

EC number: NA

Molecular weight: Translated: 29465; Mature: 29465

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLELVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAG
CEEEEEECCCEEEECCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KRTSAESFGINLGMARVPRVKNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAV
CCCCHHHCCCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCHHHHHHHHHCCHHHHHHH
ISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVK
HHHHHCCCCEEEEEECCCEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHH
ERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG
HHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCEEEEEECCC
AHPGRLTIYTETSIKILDERLSKRLVS
CCCCEEEEEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYLELVKKNSVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAG
CEEEEEECCCEEEECCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KRTSAESFGINLGMARVPRVKNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAV
CCCCHHHCCCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCHHHHHHHHHCCHHHHHHH
ISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVK
HHHHHCCCCEEEEEECCCEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHH
ERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG
HHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCEEEEEECCC
AHPGRLTIYTETSIKILDERLSKRLVS
CCCCEEEEEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA