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The map label for this gene is yfhQ [C]

Identifier: 227827666

GI number: 227827666

Start: 1318176

End: 1318889

Strand: Direct

Name: yfhQ [C]

Synonym: M1425_1395

Alternate gene names: 227827666

Gene position: 1318176-1318889 (Clockwise)

Preceding gene: 227827665

Following gene: 227827667

Centisome position: 50.53

GC content: 33.89

Gene sequence:

>714_bases
ATGATAAGGGTAGTTTTAGTAGAGCCTGAAGGTGAATATAACATTGGTTTTGTTGCAAGGTTATGTAGAAATTTTTCGGT
TGATGAACTCTATATAGTTAATCCAAGGGCCAACGTTTCTGAGGCTTTCAAGTTTTCCGCTGGTGGGAAAGAATTTTTAG
AGAAGGCTAAAATTGTGAACAGCTTTGATGAGGCTATAAATGACGTCGATATTAAGATAGCTACTTCCAGTATAGCAGAT
AATAATGGAGATATTTTACGGAAATCTATAAGACCGTGGGAACTGCTGTCTTTAATTCAAGGTAAGAAAGTCGCATTGGT
TTTTGGTAGAGAAAGCGTTGGTCTAACTAGAGAAGAGATATTTAAGTGTGATTTTCTCCTTTATATCCCAGCAAATCCTA
GTTATCCCGTTCTTAATCTTTCTCATGCTGTTGGCATAGTATTATATGAAATTTGGAAAAATAGAGAATTATTGAATAAT
CCCCAGACTTCTACAATTTCTGATCAATCAATAAAATTAATAGATAGATATGCCGAAATTCTCTATAAAATGCTTAAAAG
ATCTGATGACGATTATAAGATGTATATAGCACTAAAGCGTACAATTATAAAGGGAGTAAAGGATGAGGAAGAGGCTAGGG
TCATTGTGCATTTTTTGAGAAAACTTTATACCAGAATAATCCACAATGAAAAGGAGATGAATAATGTCAGCTAA

Upstream 100 bases:

>100_bases
ATATTATATGCTATTAATAAGGGAAGATTCAAAATTTCACAGAAGTATGAGAAGGTTATTGGGTATGAGAGATTGATAGG
ATTGGAGTTGGTGAAGGAGG

Downstream 100 bases:

>100_bases
AGGAGGGACAATCAAGGATAAGTGGAAAATGAAGAAATGGTATAGTATAATTGCACCTAAAGTTTTTGGAGAGGTTTCCT
TAGGTTCTACACCAGCCTAC

Product: RNA methyltransferase, TrmH family, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MIRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANVSEAFKFSAGGKEFLEKAKIVNSFDEAINDVDIKIATSSIAD
NNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNN
PQTSTISDQSIKLIDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEMNNVS

Sequences:

>Translated_237_residues
MIRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANVSEAFKFSAGGKEFLEKAKIVNSFDEAINDVDIKIATSSIAD
NNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNN
PQTSTISDQSIKLIDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEMNNVS
>Mature_237_residues
MIRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANVSEAFKFSAGGKEFLEKAKIVNSFDEAINDVDIKIATSSIAD
NNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNN
PQTSTISDQSIKLIDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEMNNVS

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=245, Percent_Identity=31.0204081632653, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790865, Length=197, Percent_Identity=30.4568527918782, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27264; Mature: 27264

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANVSEAFKFSAGGKEFLEKAKIVN
CEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHH
SFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTREEI
HHHHHHCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCHHHH
FKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQSIKLIDRYAEI
HEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHH
LYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEMNNVS
HHHHHHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure
MIRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANVSEAFKFSAGGKEFLEKAKIVN
CEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHH
SFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTREEI
HHHHHHCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCHHHH
FKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQSIKLIDRYAEI
HEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHH
LYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEMNNVS
HHHHHHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]