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The map label for this gene is ydhC [H]

Identifier: 227826823

GI number: 227826823

Start: 382843

End: 383481

Strand: Direct

Name: ydhC [H]

Synonym: M1425_0439

Alternate gene names: 227826823

Gene position: 382843-383481 (Clockwise)

Preceding gene: 227826822

Following gene: 227826824

Centisome position: 14.67

GC content: 36.15

Gene sequence:

>639_bases
ATGTCATTATCACAAATAGCTTACGAGAAAATTCTGGAATACATTATTACTGGCAAATATAAGCCCGGTAGCACTCTGAA
AGAAGAGGAGCTTGCGTCATTACTTAAGATTAGTAGAACCCCAATTAGGGAAGCCTTAGTTAGGTTAGAAAAGGAGGGAG
TGATAGTAAAAAATGGTAAATCATTCACCGTAATACCGTTAACTGAAAGTGATATTCTTCAACTCTACGAGGTTAGAATT
AACCTGGAGTCTTTAGCAGCTAAACTAGCAGCAATAAGAGCTAGCCAAGATGAGATTAACAAGATCATAAACGTTTTAAA
CGAGATAAAGGAGTCAGTAAATGCTGATCCTTTAACCTTAGCCAACTTAAACGGTAACTTACATAGAACCATTGCCGAGG
CGTCACACAACAAATACATTGTGGATATTTTGGATAGTATTAGACTAAAACTAAAAATTGTTAGGATAACCTTGTTTACC
AGCTTCCAGAGAAGGGATGATGAGTTTAGGGAACATGAGAGTATAGTAATAGCAATAAAGAATCGCAGTCCAGATTTGGC
TTATGATATGATGAGAATGCATGAGGAGAAAGTTTTAGAATACGTGAAGCAAAACATTCTACCAGTGTTGTTTAGATAA

Upstream 100 bases:

>100_bases
GTAATTCGTACTAATTCTTCAGTAAAAAATGTTTCTTTCATGTATACTTAAAGTGACTCAAATGGCAACACTTATAAGTT
TACTATAGAAACATTTCCAT

Downstream 100 bases:

>100_bases
AATTTTATGCTCAATTCTCATTATTAACTTATGATAAGGAGATCCCAGTTATACGTTCCCGCAATTTCCGAAAAGATGAT
AAGAAAATCGATTGAACTAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSLSQIAYEKILEYIITGKYKPGSTLKEEELASLLKISRTPIREALVRLEKEGVIVKNGKSFTVIPLTESDILQLYEVRI
NLESLAAKLAAIRASQDEINKIINVLNEIKESVNADPLTLANLNGNLHRTIAEASHNKYIVDILDSIRLKLKIVRITLFT
SFQRRDDEFREHESIVIAIKNRSPDLAYDMMRMHEEKVLEYVKQNILPVLFR

Sequences:

>Translated_212_residues
MSLSQIAYEKILEYIITGKYKPGSTLKEEELASLLKISRTPIREALVRLEKEGVIVKNGKSFTVIPLTESDILQLYEVRI
NLESLAAKLAAIRASQDEINKIINVLNEIKESVNADPLTLANLNGNLHRTIAEASHNKYIVDILDSIRLKLKIVRITLFT
SFQRRDDEFREHESIVIAIKNRSPDLAYDMMRMHEEKVLEYVKQNILPVLFR
>Mature_211_residues
SLSQIAYEKILEYIITGKYKPGSTLKEEELASLLKISRTPIREALVRLEKEGVIVKNGKSFTVIPLTESDILQLYEVRIN
LESLAAKLAAIRASQDEINKIINVLNEIKESVNADPLTLANLNGNLHRTIAEASHNKYIVDILDSIRLKLKIVRITLFTS
FQRRDDEFREHESIVIAIKNRSPDLAYDMMRMHEEKVLEYVKQNILPVLFR

Specific function: Repressor For The Uxurba Operon. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=219, Percent_Identity=28.310502283105, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24345; Mature: 24214

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSQIAYEKILEYIITGKYKPGSTLKEEELASLLKISRTPIREALVRLEKEGVIVKNGK
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCC
SFTVIPLTESDILQLYEVRINLESLAAKLAAIRASQDEINKIINVLNEIKESVNADPLTL
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEE
ANLNGNLHRTIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDDEFREHESIVIAIK
EECCCCHHHHHHHHCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHCCHHHHCCCEEEEEEE
NRSPDLAYDMMRMHEEKVLEYVKQNILPVLFR
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure 
SLSQIAYEKILEYIITGKYKPGSTLKEEELASLLKISRTPIREALVRLEKEGVIVKNGK
CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCC
SFTVIPLTESDILQLYEVRINLESLAAKLAAIRASQDEINKIINVLNEIKESVNADPLTL
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEE
ANLNGNLHRTIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDDEFREHESIVIAIK
EECCCCHHHHHHHHCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHCCHHHHCCCEEEEEEE
NRSPDLAYDMMRMHEEKVLEYVKQNILPVLFR
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]