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The map label for this gene is lsrD [H]

Identifier: 227814221

GI number: 227814221

Start: 1494008

End: 1494670

Strand: Direct

Name: lsrD [H]

Synonym: BAMEG_1629

Alternate gene names: 227814221

Gene position: 1494008-1494670 (Clockwise)

Preceding gene: 227814219

Following gene: 227814222

Centisome position: 28.57

GC content: 41.03

Gene sequence:

>663_bases
ATGACAGATGTAGAACCACTCGTCGTTACACTCGGCACGATGTTTTTATACGGAGGAATTGCACTCGTCATTTCAGGAGG
GGCAGGTGCTTCTGGGTATGAAGGGATAAGTGGTTTACCTGACGCATTTGTACAACTGGCAAGCGGTAGTTTTATAGGAA
TACCAAATTTATTATGGCTACTGATCGTATTAACAGTTTTATGTGCTGTATTATTTCACCGAACTATATACGGACGCCAT
GTAAAATTAACAGGTGCGAACGAAAATGCAGCAAAATACACCGGGATTATGACGAAGAAAGTAGTCATCATCGCTTACAT
GCTTTCCGGGTTAGGAGGTGGATTAGGGGGGACTTTCTTAACTGCCTATTTCGGTTCCGCACGTGCTGATATGGGAAGTG
AAACAATTTTACCAATCATTACGGCAGTCGTATTAGGCGGGACACTTATTACAGGGGGAAAAGGAAGCATTATCGGTACT
GTACTGGCGAGTATTTTCATTGGACTCATGCAGTATGGCTTGCAAATGACGGGTTTAACAAATGAACAATCCAACGTAGT
AATTGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCACACTGGGGAAAAGAAAGAATT
TGCATAAGGGGGAAATGTCATGA

Upstream 100 bases:

>100_bases
CGGTGTACTTTGGATGAACGGAATATCTATTTTGTTTGCTGTCATAATATCTCTAATAATTAGTTGTTTAGCAGGCGCTT
TAAACGGATTTATTATAAAA

Downstream 100 bases:

>100_bases
AGAGAAAACTAGGGATTGTATTCATTGTATGTATTTGTTTAATCGGTTTAATCGCCTGTTCTAGTCAAACCGCAGATAAG
AAAAAAGCGGATGATGTGAA

Product: putative ribose ABC transporter, permease protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRH
VKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGT
VLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS

Sequences:

>Translated_220_residues
MTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRH
VKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGT
VLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS
>Mature_219_residues
TDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHV
KLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTV
LASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=216, Percent_Identity=42.1296296296296, Blast_Score=167, Evalue=3e-43,
Organism=Escherichia coli, GI1790191, Length=199, Percent_Identity=31.1557788944724, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788896, Length=163, Percent_Identity=34.3558282208589, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790524, Length=201, Percent_Identity=32.3383084577114, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI145693152, Length=202, Percent_Identity=30.1980198019802, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787793, Length=216, Percent_Identity=30.0925925925926, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082395, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789992, Length=125, Percent_Identity=30.4, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 23050; Mature: 22919

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWL
CCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
LIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFL
HHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLT
HHHHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
NEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWL
CCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
LIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFL
HHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TAYFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLT
HHHHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
NEQSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA