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The map label for this gene is lsrC [H]

Identifier: 227814219

GI number: 227814219

Start: 1492731

End: 1493684

Strand: Direct

Name: lsrC [H]

Synonym: BAMEG_1628

Alternate gene names: 227814219

Gene position: 1492731-1493684 (Clockwise)

Preceding gene: 227814218

Following gene: 227814221

Centisome position: 28.54

GC content: 36.27

Gene sequence:

>954_bases
ATGAAGCGCATGCTAAAAATACACGAAATGTCTATCATAACGTTACTACTAATTTATATAGCTATTGTCGGAATGATAAA
CCCTAGTTTTATTCAATTTAACTCGTTATCTTTAATGGTGAAATCAAGCGTTATTTTAGTCGTGCTAGCAATCGGCCAAT
CGTTCGTCTTATTTACGAAAAATATAGATGTATCAGTTGGTTCAAGCATGGGGTTAAGTGCAGCAGTTTGCGGAATGTTG
CTAACGAATGAATATAGTGCATCCTTGTCGATATTTGCTGCTATTACACTTGGCGCTATTATCGGTTTCGTAAACGGGAT
GGGCGTTGCGAAGTTTCGAGTACCAGCCATTATTATGACATTAGGCATGTTAGGAATTATTAGAGGTGCGATGTTGATTT
TCACAGGCGGGAAGTGGATTGAAGATATTCCAAACGATTTTAAGCAGCTGTCATCTATCGTCATTCTTGGTTTACCTATA
ACTGTATGGTTCGTTCTTATTATTTTACTACTACTATACTTCTTTTTAAGGAAAGTGCCATTTGGAAGATACTTTTATGC
GGTAGGTGATAATGAAGATGGCGCGAGACTTATTGGTATACCTGTTAATAAAGTGAAGATATGTGCGTTTATAATTTCAG
GCATAAGTGCTGCACTCGCTGGTTGCATATTTGTTATGAATATCGGGTTCATTCCAAATCAAACTGGTACAGGATTAGAA
TTACAAGTAATCGCAGCCGCTGTACTAGGAGGCATTCATTTAAAAGGAGGAACAGGATCTTTATTTGGAGCTGCATTAGG
AGCATTATTTTTAGAAACAATAAGCAGTTCACTCGTCTTTTTAAAAATACCAGCATTTTGGAATAATGCTATTTCAGGTT
TTTTATTATTACTTATCATCATACTGGATAGTGTTATGAAAAAGTGGAAGGCAGAAAGGAGGATGAATCTATGA

Upstream 100 bases:

>100_bases
GTGTATATGTAATGAGAAATGGACGATTTGTTTCTCATATGGAAAAAGAACAACTGAGTGTGAATGAAGTTACACGCCTT
GCATACGGAGGTGTAGCGGA

Downstream 100 bases:

>100_bases
AGTATGTATACAGATGGGAAGGTGTTCTAATTGTATTGCTTCTTATAGAATTCATTCTCTTTAGTTTAATCAATAGTGAT
TTCTTAAATATTAGTAATCT

Product: putative ribose ABC transporter, permease protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKRMLKIHEMSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPVNKVKICAFIISGISAALAGCIFVMNIGFIPNQTGTGLE
LQVIAAAVLGGIHLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Sequences:

>Translated_317_residues
MKRMLKIHEMSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPVNKVKICAFIISGISAALAGCIFVMNIGFIPNQTGTGLE
LQVIAAAVLGGIHLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL
>Mature_317_residues
MKRMLKIHEMSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPVNKVKICAFIISGISAALAGCIFVMNIGFIPNQTGTGLE
LQVIAAAVLGGIHLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=47.5352112676056, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=35.6435643564356, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI145693152, Length=282, Percent_Identity=33.3333333333333, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=29.6774193548387, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790524, Length=296, Percent_Identity=30.0675675675676, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=29.0625, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=37.7777777777778, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788471, Length=323, Percent_Identity=27.5541795665635, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=28.6821705426357, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=25.9259259259259, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34118; Mature: 34118

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMLKIHEMSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMLLTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCC
FGRYFYAVGDNEDGARLIGIPVNKVKICAFIISGISAALAGCIFVMNIGFIPNQTGTGLE
CCCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGIHLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRMLKIHEMSIITLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMLLTNEYSASLSIFAAITLGAIIGFVNGMGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVILGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCC
FGRYFYAVGDNEDGARLIGIPVNKVKICAFIISGISAALAGCIFVMNIGFIPNQTGTGLE
CCCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGIHLKGGTGSLFGAALGALFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]