Click here to switch to the map view.

The map label for this gene is ybdK [H]

Identifier: 227814133

GI number: 227814133

Start: 1413026

End: 1414027

Strand: Direct

Name: ybdK [H]

Synonym: BAMEG_1541

Alternate gene names: 227814133

Gene position: 1413026-1414027 (Clockwise)

Preceding gene: 227814132

Following gene: 227814136

Centisome position: 27.02

GC content: 26.85

Gene sequence:

>1002_bases
ATGAACTTAAAGAAAAAATATCAGTTACTATTATTCTCCGCTATTATTAGCGTACCACTGTTATTGTTGTCGATTAGTAT
CTTTGTATCAGTTATTTATAATGCTGTCTTTAAAACTAAAAATAAGAACATCCCTTTTCACGAATCCTATGCATATCCTA
CTATGTTAATCATATTTTTGTTATCATTATTAGTATTAGCTTTTGTATTTTCAAGGTCGATTAACACCGTATTAAATAAA
ATTAATATATTAAATCAAACAATTCGAGATTTAGCGAGTGATAAAAAAATCCCTAATATAATAGATGTTAAAAGCGATGA
TGAAATGGGAGAACTGATTAAATCAGTAAACTTGCTTATAGAAAGAACAACTTATCGAGAATTGGAACTACAACAACAGG
AACAAATAAAAAAGGAACTATTAAATAAATTACGGCATGATATTAATACACCCTTAACAGCGGTTAGATTACAATTATAT
TATTTAGAAGGTGAGTACAAGGGACAAGCACCAGTACTTGAATCACTGTATGAGCAGATACAATATATAAGTGATTTAAC
TAACGAATTTAATATGCAATCTACCGAAACCTTAGAGAATACTTATATTGTGCATGATGAAGTGAATATACATAATTTAA
TAGAAACTATGATTAAAAAATGGAGCTATTTGTATAGCATTCATAAAATTGAATTAGTATATAATCCACAAGATAAAGAG
TTGATATGGAATAGTAATGAGTTATGGATTCAAAGGCTATTTGATAATATTTTTCAAAACGTCCTTAAACATTCAAAAGC
TAAAAAACTAAAAATCATTATAGATGAAGATATTGTTTATTTTAGAGATAATGGGATTGGGTTCGATATAAATAGTAAAG
GAACAGGACTTGGTTTGAAAAATATTGAAGATATATCAAAAATGTTCGATATAAAATACACTTTACAATCAAATAGTGAG
GGGACTATGTTTTCATTTGAAAATACTCAAAAGAATATTTAA

Upstream 100 bases:

>100_bases
TACATATAAGGAAAATCAGAACCAAAATTGATGATAAAACAGGTGATATTATTCAGAACATATATGGAGAAGGGTATAGA
TTAAATACCTATATGAAGAA

Downstream 100 bases:

>100_bases
ATTTCAAGTGTAAGTTTTATTAGTAACATCTATCAGGTCGTTACAGAACCAAAAACGTTTAACTGAAGAAGAGTGGAGTA
CGTTTTTCACACAGATGCTA

Product: putative sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFLLSLLVLAFVFSRSINTVLNK
INILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLIERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLY
YLEGEYKGQAPVLESLYEQIQYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIETMIKKWSYLYSIHKIELVYNPQDKE
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLKNIEDISKMFDIKYTLQSNSE
GTMFSFENTQKNI

Sequences:

>Translated_333_residues
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFLLSLLVLAFVFSRSINTVLNK
INILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLIERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLY
YLEGEYKGQAPVLESLYEQIQYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIETMIKKWSYLYSIHKIELVYNPQDKE
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLKNIEDISKMFDIKYTLQSNSE
GTMFSFENTQKNI
>Mature_333_residues
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFLLSLLVLAFVFSRSINTVLNK
INILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLIERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLY
YLEGEYKGQAPVLESLYEQIQYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIETMIKKWSYLYSIHKIELVYNPQDKE
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLKNIEDISKMFDIKYTLQSNSE
GTMFSFENTQKNI

Specific function: Member of the two-component regulatory system ybdK/ybdJ. Probably activates ybdJ by phosphorylation [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 38951; Mature: 38951

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LSLLVLAFVFSRSINTVLNKINILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH
ERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLYYLEGEYKGQAPVLESLYEQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCCHHHHHHHHHH
QYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIETMIKKWSYLYSIHKIELVYNPQDKE
HHHHHHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCC
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLK
EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCEEEEECCCCCCCCCC
NIEDISKMFDIKYTLQSNSEGTMFSFENTQKNI
HHHHHHHHHHEEEEEECCCCCCEEEECCCCCCC
>Mature Secondary Structure
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LSLLVLAFVFSRSINTVLNKINILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH
ERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLYYLEGEYKGQAPVLESLYEQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCCHHHHHHHHHH
QYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIETMIKKWSYLYSIHKIELVYNPQDKE
HHHHHHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCC
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLK
EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCEEEEECCCCCCCCCC
NIEDISKMFDIKYTLQSNSEGTMFSFENTQKNI
HHHHHHHHHHEEEEEECCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]