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The map label for this gene is ybdJ [H]

Identifier: 227814132

GI number: 227814132

Start: 1412358

End: 1413029

Strand: Direct

Name: ybdJ [H]

Synonym: BAMEG_1540

Alternate gene names: 227814132

Gene position: 1412358-1413029 (Clockwise)

Preceding gene: 227814131

Following gene: 227814133

Centisome position: 27.0

GC content: 27.53

Gene sequence:

>672_bases
ATGAAAGTATATAACATATTAATTGTTGAAGACGATTTAATTATAGGAGATTTATTACAAAAAATTTTACAGCGTGAGAA
GTATAATGTGTATTGGGAGAAAGAGGGAAGGAAAGTTCTTGATATAATTCATGAAATAGATTTAGTCGTAATGGATGTTA
TGTTACCAGGCGAAGATGGTTATCAAATTACAAAGAAAATAAAAAATCTAGGATTAAATATTCCAATTATATTTCTATCA
GCAAGGAATGATATGGATAGTAAACTAAAAGGTTTAACTATTGGAGAAGAATACATGATAAAACCTTTTGACCCTAGAGA
GTTGTTGTTAAGGATTCAGAAAATGTTAGGTAATCAATATGGTACGTTCACACAAATTAACCATGTATTTATAGATGCAG
AATATAAAAGAGTTTTTATTAATGATTTGCGTAATGAAGTTGCTTTTACAACAATTGAACGTAAAATATTCTTCTATTTA
TATGAAAATAGAGATAGAATTTTATCGAAAGAACACTTCTATGATTACCTATGGCAACTCGAAGATAGAAATCAAAATAT
CATGAACGTACATATAAGGAAAATCAGAACCAAAATTGATGATAAAACAGGTGATATTATTCAGAACATATATGGAGAAG
GGTATAGATTAAATACCTATATGAAGAAATGA

Upstream 100 bases:

>100_bases
TATGCTCCTGATGAAATATACAAAATTGCTATGGATTTTATTAAGAATAAAGTAGTGAAGAACTAAGCAATTGTTATTTT
AGTGATGAAAGGTCTACATA

Downstream 100 bases:

>100_bases
ACTTAAAGAAAAAATATCAGTTACTATTATTCTCCGCTATTATTAGCGTACCACTGTTATTGTTGTCGATTAGTATCTTT
GTATCAGTTATTTATAATGC

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MKVYNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHEIDLVVMDVMLPGEDGYQITKKIKNLGLNIPIIFLS
ARNDMDSKLKGLTIGEEYMIKPFDPRELLLRIQKMLGNQYGTFTQINHVFIDAEYKRVFINDLRNEVAFTTIERKIFFYL
YENRDRILSKEHFYDYLWQLEDRNQNIMNVHIRKIRTKIDDKTGDIIQNIYGEGYRLNTYMKK

Sequences:

>Translated_223_residues
MKVYNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHEIDLVVMDVMLPGEDGYQITKKIKNLGLNIPIIFLS
ARNDMDSKLKGLTIGEEYMIKPFDPRELLLRIQKMLGNQYGTFTQINHVFIDAEYKRVFINDLRNEVAFTTIERKIFFYL
YENRDRILSKEHFYDYLWQLEDRNQNIMNVHIRKIRTKIDDKTGDIIQNIYGEGYRLNTYMKK
>Mature_223_residues
MKVYNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHEIDLVVMDVMLPGEDGYQITKKIKNLGLNIPIIFLS
ARNDMDSKLKGLTIGEEYMIKPFDPRELLLRIQKMLGNQYGTFTQINHVFIDAEYKRVFINDLRNEVAFTTIERKIFFYL
YENRDRILSKEHFYDYLWQLEDRNQNIMNVHIRKIRTKIDDKTGDIIQNIYGEGYRLNTYMKK

Specific function: Member of the two-component regulatory system ybdK/ybdJ [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=29.1845493562232, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=27.1929824561404, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=28.3783783783784, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790860, Length=228, Percent_Identity=28.0701754385965, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87082012, Length=217, Percent_Identity=27.6497695852535, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=26.6968325791855, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=29.9559471365639, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=27.1929824561404, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=28.9592760180996, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=24.7706422018349, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790437, Length=137, Percent_Identity=32.1167883211679, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI2367329, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786911, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26783; Mature: 26783

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHEIDLVVMDVMLPGEDG
CCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHEEEEEECCCCC
YQITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGEEYMIKPFDPRELLLRIQKMLGNQY
HHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCEECHHHCCCCCCHHHHHHHHHHHHCCCC
GTFTQINHVFIDAEYKRVFINDLRNEVAFTTIERKIFFYLYENRDRILSKEHFYDYLWQL
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHEEHHEEEEEEEECCCHHHHHHHHHHHHHHH
EDRNQNIMNVHIRKIRTKIDDKTGDIIQNIYGEGYRLNTYMKK
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECEECC
>Mature Secondary Structure
MKVYNILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHEIDLVVMDVMLPGEDG
CCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHEEEEEECCCCC
YQITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGEEYMIKPFDPRELLLRIQKMLGNQY
HHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCEECHHHCCCCCCHHHHHHHHHHHHCCCC
GTFTQINHVFIDAEYKRVFINDLRNEVAFTTIERKIFFYLYENRDRILSKEHFYDYLWQL
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHEEHHEEEEEEEECCCHHHHHHHHHHHHHHH
EDRNQNIMNVHIRKIRTKIDDKTGDIIQNIYGEGYRLNTYMKK
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]