Click here to switch to the map view.

The map label for this gene is dppE [H]

Identifier: 227813584

GI number: 227813584

Start: 884666

End: 886369

Strand: Direct

Name: dppE [H]

Synonym: BAMEG_0988

Alternate gene names: 227813584

Gene position: 884666-886369 (Clockwise)

Preceding gene: 227813583

Following gene: 227813585

Centisome position: 16.91

GC content: 34.51

Gene sequence:

>1704_bases
GTGAAAAAGAAAAAAATGAAAAAACTAACAGCAGTTGTAGCACCAGTTTTAGCAATGAGTATGGCATTAACAGCATGTTC
TACATCAGGTGGAGATAAGAAGACAAGCACAAATTCTAGCTCTGGCGGAGATAGCAAATCAGAAGAAAAATTAGCAGCGA
AACAAGTGTTCAATAAAACAGAAAATCAGGAAATTCCAACAATGGATACGTCGAAGAGTACAGATACTTTGGGCTCTCAA
ATTTTAGGGAACACAATGGAAGGCTTATACCGTTTAGATAAAGAGAATAAACCAATCCCAGCTGCGGCAGAATCAAGCAC
GAAGAGTGAGGATGGTAAAAAATATACATTTAAATTACGTAAAGATGCAAAATGGTCAAATGGTGATTCTGTAACAGCGA
AAGATTTCGTATTTGCATGGCAACGTTTGTTAGATCCAAAAACAGCTGCTGAGTATGCATTCATTGCATTCCCAATTAAA
AATGCAGAAGCGGTTAATAAAGGGGAAAAACCTGTAACAGAACTAGGAGTTAAAGCAGTAGATGACCTTACTTTAGAAGT
TGAATTAGAACAAGCAGTACCATACTTCTTAAACTTAGTAGCATTCCCATCATACTATCCATTAAATGAGAAATTCGTAA
AAGAAAAAGGGGATAAATACGGTTTAGAATCTGATACAACTGTATATAACGGACCGTTCGTTCTTACTGATTGGAAGCAT
GAGCAAGGCTGGAAACTGAAGAAGAATGATCAATATTGGGATAAAAAGACTGTAAAATTAGATGAAATTAACTATAGTGT
TGTAAAAGAGCCAGCAACTAATGTGAATTTATATGATAGTGGTCAAATTGATTTCTCCTTATTAACAGGTGAATTTGTTG
ACAAATATAGAAATAATAAAGAGGAATATGGGGTGTATAACGAACCAAGTACGTTCTTTATACGTTTAAACCAAAAACGT
GGTGGACAAGATACACCATTAAAGAGTAAAAAATTACGTGAAGCAATTGCGCTATCAATTGATAAAAAGAATTTAACAAA
TGTAATTTTAAATGATGGGTCAAAACCTGCAGATTATTTAGTGCCGAAAGGATTAGCAGCTGGACCTGATGGAAAAGACT
TCCAAGAAACGTTTAAAAACGGTGTTAAACCAGATGCGAAAAAAGCAGCTGCTGCATGGGAAGAAGCGAAAAAAGAACTT
GGAAAAGATCAAGTTACAATTGAGTTTTTAAACTATGATACTGGTAATGCGAAAAAAGTTGGGGAATATGTAAAAGATCA
AATTGAGAAAAACTTAAAAGGTGTAACAGTAAATATTAAACTGCAACCGTTTAAACAAAAACTTAAATTAGAATCAGATC
AAGATTATGATATTTCATATGGTGGATGGAGCCCAGATTATGCGGATCCAATGACATATTTAGATATGTTTGAAAGTAAG
CACTCTCATAACCAAATGAGTTTCTCTGATCAGAAATATGATGAAATAATCAAAAAAGCTGGTGGAGAATTAATGACTGA
TGCGAAGAAACGCTGGGAGGAGCTAGGAAAAGCAGAGGAATTACTTCTTGAAGAAGATGTTGCCCTTGTACCTTTATATC
AAAGTGCTAGATCTTATGTTATGAAACCGCATGTAAAAGGTGTTGTTAAGCATAATATTAGCCCAGAATACAGCTATAAG
TGGGCATATGTTACTGAAAAATAA

Upstream 100 bases:

>100_bases
ATAATAGTTAATAAGAATCTTCTGATAAATATATAAAGAAAAACAGAATTATCAGAAAATTCTTAAATGAGAGCGTTAAG
AATTAGGGAGGGTACAGAAA

Downstream 100 bases:

>100_bases
TAGAGTTGAAAAAGTACTTCAAAGCAGTCTACATGCCTTGAAGTACTTTTTTTATTGTACGATTGAACGCGAAAATGAAA
GAGTGGAGAAGAAATGAAAT

Product: putative oligopeptide ABC transporter, oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MKKKKMKKLTAVVAPVLAMSMALTACSTSGGDKKTSTNSSSGGDSKSEEKLAAKQVFNKTENQEIPTMDTSKSTDTLGSQ
ILGNTMEGLYRLDKENKPIPAAAESSTKSEDGKKYTFKLRKDAKWSNGDSVTAKDFVFAWQRLLDPKTAAEYAFIAFPIK
NAEAVNKGEKPVTELGVKAVDDLTLEVELEQAVPYFLNLVAFPSYYPLNEKFVKEKGDKYGLESDTTVYNGPFVLTDWKH
EQGWKLKKNDQYWDKKTVKLDEINYSVVKEPATNVNLYDSGQIDFSLLTGEFVDKYRNNKEEYGVYNEPSTFFIRLNQKR
GGQDTPLKSKKLREAIALSIDKKNLTNVILNDGSKPADYLVPKGLAAGPDGKDFQETFKNGVKPDAKKAAAAWEEAKKEL
GKDQVTIEFLNYDTGNAKKVGEYVKDQIEKNLKGVTVNIKLQPFKQKLKLESDQDYDISYGGWSPDYADPMTYLDMFESK
HSHNQMSFSDQKYDEIIKKAGGELMTDAKKRWEELGKAEELLLEEDVALVPLYQSARSYVMKPHVKGVVKHNISPEYSYK
WAYVTEK

Sequences:

>Translated_567_residues
MKKKKMKKLTAVVAPVLAMSMALTACSTSGGDKKTSTNSSSGGDSKSEEKLAAKQVFNKTENQEIPTMDTSKSTDTLGSQ
ILGNTMEGLYRLDKENKPIPAAAESSTKSEDGKKYTFKLRKDAKWSNGDSVTAKDFVFAWQRLLDPKTAAEYAFIAFPIK
NAEAVNKGEKPVTELGVKAVDDLTLEVELEQAVPYFLNLVAFPSYYPLNEKFVKEKGDKYGLESDTTVYNGPFVLTDWKH
EQGWKLKKNDQYWDKKTVKLDEINYSVVKEPATNVNLYDSGQIDFSLLTGEFVDKYRNNKEEYGVYNEPSTFFIRLNQKR
GGQDTPLKSKKLREAIALSIDKKNLTNVILNDGSKPADYLVPKGLAAGPDGKDFQETFKNGVKPDAKKAAAAWEEAKKEL
GKDQVTIEFLNYDTGNAKKVGEYVKDQIEKNLKGVTVNIKLQPFKQKLKLESDQDYDISYGGWSPDYADPMTYLDMFESK
HSHNQMSFSDQKYDEIIKKAGGELMTDAKKRWEELGKAEELLLEEDVALVPLYQSARSYVMKPHVKGVVKHNISPEYSYK
WAYVTEK
>Mature_567_residues
MKKKKMKKLTAVVAPVLAMSMALTACSTSGGDKKTSTNSSSGGDSKSEEKLAAKQVFNKTENQEIPTMDTSKSTDTLGSQ
ILGNTMEGLYRLDKENKPIPAAAESSTKSEDGKKYTFKLRKDAKWSNGDSVTAKDFVFAWQRLLDPKTAAEYAFIAFPIK
NAEAVNKGEKPVTELGVKAVDDLTLEVELEQAVPYFLNLVAFPSYYPLNEKFVKEKGDKYGLESDTTVYNGPFVLTDWKH
EQGWKLKKNDQYWDKKTVKLDEINYSVVKEPATNVNLYDSGQIDFSLLTGEFVDKYRNNKEEYGVYNEPSTFFIRLNQKR
GGQDTPLKSKKLREAIALSIDKKNLTNVILNDGSKPADYLVPKGLAAGPDGKDFQETFKNGVKPDAKKAAAAWEEAKKEL
GKDQVTIEFLNYDTGNAKKVGEYVKDQIEKNLKGVTVNIKLQPFKQKLKLESDQDYDISYGGWSPDYADPMTYLDMFESK
HSHNQMSFSDQKYDEIIKKAGGELMTDAKKRWEELGKAEELLLEEDVALVPLYQSARSYVMKPHVKGVVKHNISPEYSYK
WAYVTEK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=553, Percent_Identity=30.5605786618445, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI1789397, Length=520, Percent_Identity=29.0384615384615, Blast_Score=215, Evalue=5e-57,
Organism=Escherichia coli, GI87081878, Length=542, Percent_Identity=28.4132841328413, Blast_Score=208, Evalue=8e-55,
Organism=Escherichia coli, GI1787762, Length=458, Percent_Identity=25.9825327510917, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1787052, Length=485, Percent_Identity=23.9175257731959, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1789887, Length=516, Percent_Identity=22.6744186046512, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1789966, Length=475, Percent_Identity=22.7368421052632, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63846; Mature: 63846

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKMKKLTAVVAPVLAMSMALTACSTSGGDKKTSTNSSSGGDSKSEEKLAAKQVFNKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
ENQEIPTMDTSKSTDTLGSQILGNTMEGLYRLDKENKPIPAAAESSTKSEDGKKYTFKLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEE
KDAKWSNGDSVTAKDFVFAWQRLLDPKTAAEYAFIAFPIKNAEAVNKGEKPVTELGVKAV
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCEEEEEEECCCCHHHCCCCCCHHHHCCHHH
DDLTLEVELEQAVPYFLNLVAFPSYYPLNEKFVKEKGDKYGLESDTTVYNGPFVLTDWKH
CCEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCEEEECCCC
EQGWKLKKNDQYWDKKTVKLDEINYSVVKEPATNVNLYDSGQIDFSLLTGEFVDKYRNNK
CCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCEEEECCCEEEEEHHHHHHHHHHCCH
EEYGVYNEPSTFFIRLNQKRGGQDTPLKSKKLREAIALSIDKKNLTNVILNDGSKPADYL
HHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHH
VPKGLAAGPDGKDFQETFKNGVKPDAKKAAAAWEEAKKELGKDQVTIEFLNYDTGNAKKV
CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
GEYVKDQIEKNLKGVTVNIKLQPFKQKLKLESDQDYDISYGGWSPDYADPMTYLDMFESK
HHHHHHHHHCCCCEEEEEEEECCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
HSHNQMSFSDQKYDEIIKKAGGELMTDAKKRWEELGKAEELLLEEDVALVPLYQSARSYV
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEHHHHHHHH
MKPHVKGVVKHNISPEYSYKWAYVTEK
CCCHHHHHHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKKKMKKLTAVVAPVLAMSMALTACSTSGGDKKTSTNSSSGGDSKSEEKLAAKQVFNKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
ENQEIPTMDTSKSTDTLGSQILGNTMEGLYRLDKENKPIPAAAESSTKSEDGKKYTFKLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEE
KDAKWSNGDSVTAKDFVFAWQRLLDPKTAAEYAFIAFPIKNAEAVNKGEKPVTELGVKAV
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCEEEEEEECCCCHHHCCCCCCHHHHCCHHH
DDLTLEVELEQAVPYFLNLVAFPSYYPLNEKFVKEKGDKYGLESDTTVYNGPFVLTDWKH
CCEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCEEEECCCC
EQGWKLKKNDQYWDKKTVKLDEINYSVVKEPATNVNLYDSGQIDFSLLTGEFVDKYRNNK
CCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCEEEECCCEEEEEHHHHHHHHHHCCH
EEYGVYNEPSTFFIRLNQKRGGQDTPLKSKKLREAIALSIDKKNLTNVILNDGSKPADYL
HHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHH
VPKGLAAGPDGKDFQETFKNGVKPDAKKAAAAWEEAKKELGKDQVTIEFLNYDTGNAKKV
CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
GEYVKDQIEKNLKGVTVNIKLQPFKQKLKLESDQDYDISYGGWSPDYADPMTYLDMFESK
HHHHHHHHHCCCCEEEEEEEECCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
HSHNQMSFSDQKYDEIIKKAGGELMTDAKKRWEELGKAEELLLEEDVALVPLYQSARSYV
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEHHHHHHHH
MKPHVKGVVKHNISPEYSYKWAYVTEK
CCCHHHHHHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]