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The map label for this gene is ychA [C]

Identifier: 227082301

GI number: 227082301

Start: 2258706

End: 2259518

Strand: Reverse

Name: ychA [C]

Synonym: VCM66_2099

Alternate gene names: 227082301

Gene position: 2259518-2258706 (Counterclockwise)

Preceding gene: 227082302

Following gene: 227082300

Centisome position: 78.12

GC content: 47.48

Gene sequence:

>813_bases
ATGCTGAATTTATGTGATGAAGATTTTGATGCGATGGAGTTGGTGGAAGGGGCGCTTGCGCTCAACAAAGCCATTAATCC
CGAAACGCAGCTAGAATGGGCTCACATCGAGTTAGCACGTCTGCTAAAAGAAGCCGAACTGGCACTGGTACATGAGCGTG
ATGAGAAAGCGCGTTTCGAGGCTTTTTTGCGCCTGTTTTATCAAGAGTGGGGCTTTAGCGGCGATCGCGAAGCCTACTTT
GATTCTCGCAATGCCTTTATTGATCAAGTGTTGCAGCGGCGCAAAGGTATTCCTGTCAGTTTAGGCTCATTACTGCTCTA
CCTAGGACACAAACTCGGCTTTCCACTCAATGGCATAAGTTTCCCGACTCAGTTTCTGCTGTCGCTCAATTGGTCGGGAG
AGCGGCCGATTTATCTCAATCCATTTAATGGCGAGATCGTGTCACAACATACACTGCAAGCTTGGTTAGTTGGGCACAAA
GGCCCACTGGCCAAGCTTAAGCCACAGCATTTACAAAGTGTCGATAATCCGACCATTATTGGGCGTTGGTTGGCGCTACT
CAAAAGTGCCTTACTGCGTGAAGAGCGCTATACTCTGGCGCTAAGATGTACCGATTTGGCACTCACTTTTGTGCCCGATG
ACCCATACGAAATCCGTGATCGTGGCTTTATTTATCAACAGCTACAGTGCCATCAAATTGCTATTTCGGACTATCAATAT
TTTATTGAGCACTGTCCGAACGATCCGGCGGCTGAATTGTTAAAAACGCAAGTCAATGCACTCAGTCACGACAGTCAAGT
GACGCTGCATTAA

Upstream 100 bases:

>100_bases
TAGCTTTGCGTTTTTTGGCGCGTTGGGCTGGTTGGCGATGGCTGGAAAAATCGCGGTCGCCAAAGCGCCGATTCTGTTTG
GTTAAGCTTAAGGTGCGACC

Downstream 100 bases:

>100_bases
CCCAACAAGAGAGATTAAGATGGAACACAAAATTGTCCATGTCGGTGATATTCCGGTTGCCAACGATAAGCCGTTTACCC
TATTTGCAGGGATGAACGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLNLCDEDFDAMELVEGALALNKAINPETQLEWAHIELARLLKEAELALVHERDEKARFEAFLRLFYQEWGFSGDREAYF
DSRNAFIDQVLQRRKGIPVSLGSLLLYLGHKLGFPLNGISFPTQFLLSLNWSGERPIYLNPFNGEIVSQHTLQAWLVGHK
GPLAKLKPQHLQSVDNPTIIGRWLALLKSALLREERYTLALRCTDLALTFVPDDPYEIRDRGFIYQQLQCHQIAISDYQY
FIEHCPNDPAAELLKTQVNALSHDSQVTLH

Sequences:

>Translated_270_residues
MLNLCDEDFDAMELVEGALALNKAINPETQLEWAHIELARLLKEAELALVHERDEKARFEAFLRLFYQEWGFSGDREAYF
DSRNAFIDQVLQRRKGIPVSLGSLLLYLGHKLGFPLNGISFPTQFLLSLNWSGERPIYLNPFNGEIVSQHTLQAWLVGHK
GPLAKLKPQHLQSVDNPTIIGRWLALLKSALLREERYTLALRCTDLALTFVPDDPYEIRDRGFIYQQLQCHQIAISDYQY
FIEHCPNDPAAELLKTQVNALSHDSQVTLH
>Mature_270_residues
MLNLCDEDFDAMELVEGALALNKAINPETQLEWAHIELARLLKEAELALVHERDEKARFEAFLRLFYQEWGFSGDREAYF
DSRNAFIDQVLQRRKGIPVSLGSLLLYLGHKLGFPLNGISFPTQFLLSLNWSGERPIYLNPFNGEIVSQHTLQAWLVGHK
GPLAKLKPQHLQSVDNPTIIGRWLALLKSALLREERYTLALRCTDLALTFVPDDPYEIRDRGFIYQQLQCHQIAISDYQY
FIEHCPNDPAAELLKTQVNALSHDSQVTLH

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family

Homologues:

Organism=Escherichia coli, GI1787465, Length=270, Percent_Identity=38.5185185185185, Blast_Score=199, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2176_VIBCH (Q9KQ28)

Other databases:

- EMBL:   AE003852
- PIR:   G82108
- RefSeq:   NP_231807.1
- GeneID:   2613312
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC2176
- TIGR:   VC_2176
- HOGENOM:   HBG644081
- OMA:   FINPWDG
- ProtClustDB:   CLSK874704
- GO:   GO:0005488
- InterPro:   IPR011990
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30985; Mature: 30985

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLCDEDFDAMELVEGALALNKAINPETQLEWAHIELARLLKEAELALVHERDEKARFE
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AFLRLFYQEWGFSGDREAYFDSRNAFIDQVLQRRKGIPVSLGSLLLYLGHKLGFPLNGIS
HHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
FPTQFLLSLNWSGERPIYLNPFNGEIVSQHTLQAWLVGHKGPLAKLKPQHLQSVDNPTII
CHHHHHEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHH
GRWLALLKSALLREERYTLALRCTDLALTFVPDDPYEIRDRGFIYQQLQCHQIAISDYQY
HHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
FIEHCPNDPAAELLKTQVNALSHDSQVTLH
HHHHCCCCHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MLNLCDEDFDAMELVEGALALNKAINPETQLEWAHIELARLLKEAELALVHERDEKARFE
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AFLRLFYQEWGFSGDREAYFDSRNAFIDQVLQRRKGIPVSLGSLLLYLGHKLGFPLNGIS
HHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
FPTQFLLSLNWSGERPIYLNPFNGEIVSQHTLQAWLVGHKGPLAKLKPQHLQSVDNPTII
CHHHHHEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHH
GRWLALLKSALLREERYTLALRCTDLALTFVPDDPYEIRDRGFIYQQLQCHQIAISDYQY
HHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
FIEHCPNDPAAELLKTQVNALSHDSQVTLH
HHHHCCCCHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301