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The map label for this gene is sirB2 [H]

Identifier: 227082302

GI number: 227082302

Start: 2259534

End: 2259917

Strand: Reverse

Name: sirB2 [H]

Synonym: VCM66_2100

Alternate gene names: 227082302

Gene position: 2259917-2259534 (Counterclockwise)

Preceding gene: 227082303

Following gene: 227082301

Centisome position: 78.13

GC content: 46.09

Gene sequence:

>384_bases
ATGTACGAAGGATTAAAACATTTTCACCTGTTCACTATCGGCGTCAGCGTAGTCATGCTGTCGATTCGCTATGTGCTCAT
GATGATGAATTCAGCACACCTAGAGCGTAAGTTTTTCAAAATTTTCCCGCATGTGAATGACACGTTATTGCTGCTTTCCG
GTATCGGTTTGATATTCATCACTGGATTCATTCCATTTACCGCTGCCGCGCCGTGGATGACAGAAAAATTTACCTGCGTG
CTGGCGTACATCGCGCTAGGCTTTTTTGCACTGAAATTAGGTCGTAATAAATTGCTGCGTAGCTTTGCGTTTTTTGGCGC
GTTGGGCTGGTTGGCGATGGCTGGAAAAATCGCGGTCGCCAAAGCGCCGATTCTGTTTGGTTAA

Upstream 100 bases:

>100_bases
TTTTGCGTGATTTAGGCTATCAAAACATCATTACCGAGCAAGATTATGCCGGTCATGATCGAGTTACACTGGGACAATAT
AAAACGGAAAGAGAAGCATA

Downstream 100 bases:

>100_bases
GCTTAAGGTGCGACCATGCTGAATTTATGTGATGAAGATTTTGATGCGATGGAGTTGGTGGAAGGGGCGCTTGCGCTCAA
CAAAGCCATTAATCCCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MYEGLKHFHLFTIGVSVVMLSIRYVLMMMNSAHLERKFFKIFPHVNDTLLLLSGIGLIFITGFIPFTAAAPWMTEKFTCV
LAYIALGFFALKLGRNKLLRSFAFFGALGWLAMAGKIAVAKAPILFG

Sequences:

>Translated_127_residues
MYEGLKHFHLFTIGVSVVMLSIRYVLMMMNSAHLERKFFKIFPHVNDTLLLLSGIGLIFITGFIPFTAAAPWMTEKFTCV
LAYIALGFFALKLGRNKLLRSFAFFGALGWLAMAGKIAVAKAPILFG
>Mature_127_residues
MYEGLKHFHLFTIGVSVVMLSIRYVLMMMNSAHLERKFFKIFPHVNDTLLLLSGIGLIFITGFIPFTAAAPWMTEKFTCV
LAYIALGFFALKLGRNKLLRSFAFFGALGWLAMAGKIAVAKAPILFG

Specific function: Unknown

COG id: COG3094

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787464, Length=126, Percent_Identity=38.8888888888889, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007360 [H]

Pfam domain/function: PF04247 SirB [H]

EC number: NA

Molecular weight: Translated: 14182; Mature: 14182

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEGLKHFHLFTIGVSVVMLSIRYVLMMMNSAHLERKFFKIFPHVNDTLLLLSGIGLIFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TGFIPFTAAAPWMTEKFTCVLAYIALGFFALKLGRNKLLRSFAFFGALGWLAMAGKIAVA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
KAPILFG
CCCCCCC
>Mature Secondary Structure
MYEGLKHFHLFTIGVSVVMLSIRYVLMMMNSAHLERKFFKIFPHVNDTLLLLSGIGLIFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TGFIPFTAAAPWMTEKFTCVLAYIALGFFALKLGRNKLLRSFAFFGALGWLAMAGKIAVA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
KAPILFG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7543480; 8905232; 9278503 [H]