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The map label for this gene is rutD [H]

Identifier: 227081874

GI number: 227081874

Start: 1810005

End: 1810823

Strand: Reverse

Name: rutD [H]

Synonym: VCM66_1665

Alternate gene names: 227081874

Gene position: 1810823-1810005 (Counterclockwise)

Preceding gene: 227081875

Following gene: 227081868

Centisome position: 62.6

GC content: 47.5

Gene sequence:

>819_bases
ATGTCTTCCCCTATGACTGCCATTGCCGAAAAAGTGCTGTTTCACAAAACTTATCTTCACCCGACAAGTCAGGAGTGGGT
GGTGTTCGTTCATGGTGCGGGGGGCAGCTCATCCATATGGTTCAAGCAGATCAAAGCGTATCGGCAGCATTTCAATTTAT
TGCTGATTGATTTGCGCGGCCATGGGAAATCCAATCAGTTACTCAGAGACTGGATTGCCAATCGCTATACGTTTAAGACT
GTGACGCTGGATGTGCTGAAAGTGCTTGATCACTTGAAAATCCAGTCGGCGCATTTTGTGGGCATGTCGCTGGGTACCAT
CATAGTGCGTAACCTTGCTGAGCTTGCCACGCATCGGGTCAATTCTATGGTGCTTGGTGGCGCGGTCACACGACTTAATG
CGCGTTCGCAAGTGTTGGTTAAGCTAGGACATTTGAGTAAGCACCTCATCCCGTACATGTGGCTGTATCGTTTATTTGCT
TACATAGTGATGCCGCAGCGTAGTCAAAAAGAGTCTCGCCATCTGTTTATTCGTGAAGCGCAAAAGCTCTGTCAGAAAGA
ATTTAAACGTTGGTTTACGTTAACCGCTGAGGTGAATCCGCTGATGCGTTATTTCCGCGACCGTGAATTGCCGATCCCAA
CCTTATATTTGATGGGAGAGAAGGACTACATGTTCATCCATCCTGTGAAAGAGATGGTGGCGCTCCACGCACAAAGTGAG
CTGTATGAAATCCCAAACTGCGGTCATGTATGTAATGTCGAGCAGCCTGAGCTGTTTAATCAGCGTTCTATCGAGTTTAT
CCAGCGCCAAATCCGTTAA

Upstream 100 bases:

>100_bases
AGGTGCCTTTTTTCTGTTTCACTCAACAGTTTCTTACAACTGGGGGGATTCTCTTGACTAAGATTATGGTAGTCTTGGCC
TGCGTAATTAAGAGGTTTCA

Downstream 100 bases:

>100_bases
TCCCTCACTGAGTGGTTTGGCTAAAACCACACTGCCAGCAGGCGGAAAATTGCCCTTCATGATGCTCCCCACACTCTGGG
CATTGCCAGCATTCGGCGGG

Product: putative beta-ketoadipate enol-lactone hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSSPMTAIAEKVLFHKTYLHPTSQEWVVFVHGAGGSSSIWFKQIKAYRQHFNLLLIDLRGHGKSNQLLRDWIANRYTFKT
VTLDVLKVLDHLKIQSAHFVGMSLGTIIVRNLAELATHRVNSMVLGGAVTRLNARSQVLVKLGHLSKHLIPYMWLYRLFA
YIVMPQRSQKESRHLFIREAQKLCQKEFKRWFTLTAEVNPLMRYFRDRELPIPTLYLMGEKDYMFIHPVKEMVALHAQSE
LYEIPNCGHVCNVEQPELFNQRSIEFIQRQIR

Sequences:

>Translated_272_residues
MSSPMTAIAEKVLFHKTYLHPTSQEWVVFVHGAGGSSSIWFKQIKAYRQHFNLLLIDLRGHGKSNQLLRDWIANRYTFKT
VTLDVLKVLDHLKIQSAHFVGMSLGTIIVRNLAELATHRVNSMVLGGAVTRLNARSQVLVKLGHLSKHLIPYMWLYRLFA
YIVMPQRSQKESRHLFIREAQKLCQKEFKRWFTLTAEVNPLMRYFRDRELPIPTLYLMGEKDYMFIHPVKEMVALHAQSE
LYEIPNCGHVCNVEQPELFNQRSIEFIQRQIR
>Mature_271_residues
SSPMTAIAEKVLFHKTYLHPTSQEWVVFVHGAGGSSSIWFKQIKAYRQHFNLLLIDLRGHGKSNQLLRDWIANRYTFKTV
TLDVLKVLDHLKIQSAHFVGMSLGTIIVRNLAELATHRVNSMVLGGAVTRLNARSQVLVKLGHLSKHLIPYMWLYRLFAY
IVMPQRSQKESRHLFIREAQKLCQKEFKRWFTLTAEVNPLMRYFRDRELPIPTLYLMGEKDYMFIHPVKEMVALHAQSEL
YEIPNCGHVCNVEQPELFNQRSIEFIQRQIR

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 31861; Mature: 31730

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPMTAIAEKVLFHKTYLHPTSQEWVVFVHGAGGSSSIWFKQIKAYRQHFNLLLIDLRG
CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECC
HGKSNQLLRDWIANRYTFKTVTLDVLKVLDHLKIQSAHFVGMSLGTIIVRNLAELATHRV
CCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NSMVLGGAVTRLNARSQVLVKLGHLSKHLIPYMWLYRLFAYIVMPQRSQKESRHLFIREA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QKLCQKEFKRWFTLTAEVNPLMRYFRDRELPIPTLYLMGEKDYMFIHPVKEMVALHAQSE
HHHHHHHHHHHEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECHHHHHHHHHHHH
LYEIPNCGHVCNVEQPELFNQRSIEFIQRQIR
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSPMTAIAEKVLFHKTYLHPTSQEWVVFVHGAGGSSSIWFKQIKAYRQHFNLLLIDLRG
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECC
HGKSNQLLRDWIANRYTFKTVTLDVLKVLDHLKIQSAHFVGMSLGTIIVRNLAELATHRV
CCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NSMVLGGAVTRLNARSQVLVKLGHLSKHLIPYMWLYRLFAYIVMPQRSQKESRHLFIREA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QKLCQKEFKRWFTLTAEVNPLMRYFRDRELPIPTLYLMGEKDYMFIHPVKEMVALHAQSE
HHHHHHHHHHHEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECHHHHHHHHHHHH
LYEIPNCGHVCNVEQPELFNQRSIEFIQRQIR
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA