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The map label for this gene is torR [H]

Identifier: 227081868

GI number: 227081868

Start: 1804657

End: 1805361

Strand: Reverse

Name: torR [H]

Synonym: VCM66_1659

Alternate gene names: 227081868

Gene position: 1805361-1804657 (Counterclockwise)

Preceding gene: 227081874

Following gene: 227081866

Centisome position: 62.41

GC content: 48.09

Gene sequence:

>705_bases
ATGAGCTATCACGTACTTGTGGTTGAAGATGACCTCGTCACGCGAAGTAAGTTAAGTGGTTACTTTCAAAATGAAGGTTA
CCAAGTGACGGAAGCAGAAAGTGGCGCACAGATGAGAGAAGCGTTAGAGCTCAATGACATCGATCTGGTTTTGCTGGACA
TTAATTTGCCCGGTGAAGACGGTCTGTTATTGACGCGAGAATTACGCAGCCAGTCGGAGATTGGCATTATTTTAGTGACA
GGACGCACCGACAGTATCGACAAAATCGTTGGCCTCGAAATGGGCGCGGACGATTATGTCACAAAACCTGTTGACCTACG
CGAGCTTCAGGTTCGTGTAAAAAACTTATTATGGCGAATTTCCCTCGCACAGCGAGAGAGAATTACCGACAAACACGATG
ACAAACTGGTGCATTTTGGTGAGTGGACGTTCGATGTTCAGCGCCGTGCATTAAGCCGTAATGGTGAGCCAGTCAAGCTC
ACTAAAGCGGAATACGAGTTGTTGGTTGCGCTTTCTTCTTATCCTAACCAAGTGCTGAGCCGTGAGCGGATTTTGAACAT
GATCAGTCACCGTGTGGATGCGCCCAACGACCGTACGATTGACGTATTGATCCGCCGTATGCGCGCCAAAATGGAAATGG
ATCCGAAAAACCCGCAAATCTTTGTGACGGTTCACGGCGAAGGGTACATGTTCGCTGGGGATTAA

Upstream 100 bases:

>100_bases
CATCAAGAAAAAGTGAGGTTTCTCACGATTTTTCTCGAGTTATTAACAAATATGAATAGAATAACCCTGCGATACATCCA
GTTATTTAAAATGGTGCATT

Downstream 100 bases:

>100_bases
ACACTGAGAGTGTCCTCATCGTTTTCTGCATTGTAAAAATAAAAAACTGGCTAAATGCCAGTTTTTTAATGCTACATATG
ATCCCTAAAGCGGATGAGGC

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDIDLVLLDINLPGEDGLLLTRELRSQSEIGIILVT
GRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISLAQRERITDKHDDKLVHFGEWTFDVQRRALSRNGEPVKL
TKAEYELLVALSSYPNQVLSRERILNMISHRVDAPNDRTIDVLIRRMRAKMEMDPKNPQIFVTVHGEGYMFAGD

Sequences:

>Translated_234_residues
MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDIDLVLLDINLPGEDGLLLTRELRSQSEIGIILVT
GRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISLAQRERITDKHDDKLVHFGEWTFDVQRRALSRNGEPVKL
TKAEYELLVALSSYPNQVLSRERILNMISHRVDAPNDRTIDVLIRRMRAKMEMDPKNPQIFVTVHGEGYMFAGD
>Mature_233_residues
SYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDIDLVLLDINLPGEDGLLLTRELRSQSEIGIILVTG
RTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISLAQRERITDKHDDKLVHFGEWTFDVQRRALSRNGEPVKLT
KAEYELLVALSSYPNQVLSRERILNMISHRVDAPNDRTIDVLIRRMRAKMEMDPKNPQIFVTVHGEGYMFAGD

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=235, Percent_Identity=55.3191489361702, Blast_Score=260, Evalue=6e-71,
Organism=Escherichia coli, GI1790863, Length=236, Percent_Identity=44.0677966101695, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=39.3162393162393, Blast_Score=170, Evalue=7e-44,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=37.3913043478261, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1786911, Length=228, Percent_Identity=32.8947368421053, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786599, Length=235, Percent_Identity=32.7659574468085, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787375, Length=230, Percent_Identity=34.7826086956522, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=32.034632034632, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790552, Length=231, Percent_Identity=32.4675324675325, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1790860, Length=230, Percent_Identity=29.1304347826087, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082012, Length=232, Percent_Identity=30.1724137931034, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=29.9559471365639, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786784, Length=228, Percent_Identity=31.140350877193, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=29.2576419213974, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788550, Length=117, Percent_Identity=37.6068376068376, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790299, Length=105, Percent_Identity=34.2857142857143, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26797; Mature: 26666

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDIDLVLLDINLPGED
CCEEEEEEECCHHHHHHHCCEECCCCEEEEECCCCHHHHHHHCCCCCEEEEEEEECCCCC
GLLLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRI
CEEEEHHHCCCCCEEEEEEECCCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
SLAQRERITDKHDDKLVHFGEWTFDVQRRALSRNGEPVKLTKAEYELLVALSSYPNQVLS
HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCCEEEEEEEHHCCHHHHH
RERILNMISHRVDAPNDRTIDVLIRRMRAKMEMDPKNPQIFVTVHGEGYMFAGD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECC
>Mature Secondary Structure 
SYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELNDIDLVLLDINLPGED
CEEEEEEECCHHHHHHHCCEECCCCEEEEECCCCHHHHHHHCCCCCEEEEEEEECCCCC
GLLLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRI
CEEEEHHHCCCCCEEEEEEECCCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
SLAQRERITDKHDDKLVHFGEWTFDVQRRALSRNGEPVKLTKAEYELLVALSSYPNQVLS
HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCCEEEEEEEHHCCHHHHH
RERILNMISHRVDAPNDRTIDVLIRRMRAKMEMDPKNPQIFVTVHGEGYMFAGD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]