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The map label for this gene is ynjC [H]

Identifier: 227081816

GI number: 227081816

Start: 1743749

End: 1745449

Strand: Direct

Name: ynjC [H]

Synonym: VCM66_1605

Alternate gene names: 227081816

Gene position: 1743749-1745449 (Clockwise)

Preceding gene: 227081815

Following gene: 227081817

Centisome position: 60.28

GC content: 50.09

Gene sequence:

>1701_bases
ATGCTTAGAACTGCCTATTGGGGTTTCATTTTGCTTTGTGTCGCGCCGATCCTACCTGGGTTGGCGGGAGTCTTGATCTC
AGCCTCAGGCTATCTGCCCGTACTTGGGCATCACCACGTATCTTGGCAGGGTTTTAGTCAAGTTTGGCAATGGCAAGGCG
TTGAATACGCCTTGCTCCTTTCTGTTACTTCGACCCTATTCAGCACTTATCTTGCCCTCTTGATGAGCTTCGCCATTTTG
CAGCGATTTTGGTTTCATCCTCGCTGGAAGCGCATAGAAAACAGTTTATCTATCCTGCTTGCCTTACCCCATGTGGCCTT
CGCGATCGGTTTTGCTTCTTTGTTTGCCTCGACCGGGTGGTTGGCTCGTCTGCTCTATTATGGCTTCGAACTCCGTGACA
ACTCGCATGAGGTGACGTGGTTGGTGCACGACCCTTACGCCATCGGCCTTACTATCGCTCTGGCGCTGAAGGAAGTGCCA
TTTATTCTGTTGATCAGCTTGCCCATTTTACAGCAGTTGAATTTAACCAAGATGAAAATGCTCAGTGCTTCACTGGGTTA
TTCGGAGCCACAAATGTGGTGGAAGATTGTTTTCCCGCAGTGGCTGCGCAAAATCCGCTTTACTTTGTTTGCCGTCGCCG
CATACGCTATTTCCGTGGTCGATTTCAGCTTAGTGTTAGGGCCGACTACTCCCCCAACGTTTTCAGTCCTAGTTTGGCAG
TGGTTTAATGAACCCGATTTGAACCTACTCCCCAGAGCCGCCTCTGGTGCGGTAGTGCTATTACTTCTCGCAAGCATAGT
GTTAGTGGCGATTGTTGCGCTTGAGTGGTTATTCACTCGCGGCTATCGCGCGTGGCAGTCTTCTGGTCGCTCTCACTTTC
CTTTGCCTCACAAAAGCATACTCACGCTCTTGTTCACCATTTCAGGAGCCATGATTCCGCTCACATTGATTTGGAGTTTG
GCACAGCGCTGGCGCTTCCCAGACCTCTTCCCAACCCAATGGACCGGACAATTTTGGTATGACGAGTGGCCGAATGTTCT
GCACAACATGGAAACCAGCGTTTTGCTTGCCCTTGGCTCCGGTAGCTTAGCGTTATTGTTGGGCATCCTTGCCCAAGAGT
ATCGGCTGCACACTCAACGGGCGATCCCGGTTTACATCATCGCGTTACCTATGTTGCTGCCCCAGCTCTCCTTGTTGTTC
GGTATTCAAGTTTTGACTCTGCTGATGGCTTCTCAAGCCTATACTTGGTGGGTGGTATGGGCACACACATTTTTTGCATT
TCCCTTAGTTTACTTAGCCTTAAGTGGCCCTTGGCAAAGCTACAATTCGAATTTCTCAAAGATTGCACGCAGTTTGGGTA
AGAGCGAATGGCAAATTTTCTGGAAAATCAAATTGCCATTGCTGTTTCCTGCTCTGCTTTATGCGTGGGCCGTCGGGATC
AGTGTCAGTCTGGCGCAGTATCTCCCCACCTTGATGCTCGGCGGCGGACGCTTAACCACTATCACAACCGAGGCCGTTGC
CCTTTCTAGCGGTTACGATCGTCGAGTGACAGCCATTTACGCCCTCTGCCAAGCACTCCTGCCTTTCGTGTTCTTTTCAA
TAGCTCTGCTTCTCGGACGTATGCAAATTCACCGCTACCGAGCAGCACAATTGACAACGGTATTTCATGATATTTTCTCT
CGAAAACCTCGCCATCCTTAA

Upstream 100 bases:

>100_bases
TTCCCTGCGATTGCTGAGCCGCACCCAAGTTGGCAAAGCGCGCTCGAAGCAGAATGGCAAAAGCGCTACGGTAATAGCTT
AAAGTAACGGTTGTCAGACC

Downstream 100 bases:

>100_bases
ACAAGATGGCCACTGCCTTTTGGCAGAGTTTAATTTGACTATCGCAGAAGGCGAGATTGTGAGCCTAATGGGCCCTAGTG
GCTGCGGCAAATCCACCTTA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MLRTAYWGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTLFSTYLALLMSFAIL
QRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVP
FILLISLPILQQLNLTKMKMLSASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQ
WFNEPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSILTLLFTISGAMIPLTLIWSL
AQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLF
GIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGI
SVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHRYRAAQLTTVFHDIFS
RKPRHP

Sequences:

>Translated_566_residues
MLRTAYWGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTLFSTYLALLMSFAIL
QRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVP
FILLISLPILQQLNLTKMKMLSASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQ
WFNEPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSILTLLFTISGAMIPLTLIWSL
AQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLF
GIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGI
SVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHRYRAAQLTTVFHDIFS
RKPRHP
>Mature_566_residues
MLRTAYWGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTLFSTYLALLMSFAIL
QRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVP
FILLISLPILQQLNLTKMKMLSASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQ
WFNEPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSILTLLFTISGAMIPLTLIWSL
AQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLF
GIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGI
SVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHRYRAAQLTTVFHDIFS
RKPRHP

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=242, Percent_Identity=33.4710743801653, Blast_Score=99, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 64201; Mature: 64201

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTAYWGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
SVTSTLFSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGW
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKM
HHHHHHHCHHEECCCCEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHH
LSASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEE
WFNEPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSI
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHH
LTLLFTISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGS
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC
GSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVW
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGI
HHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHH
SVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGR
HHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQIHRYRAAQLTTVFHDIFSRKPRHP
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRTAYWGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
SVTSTLFSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGW
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARLLYYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKM
HHHHHHHCHHEECCCCEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHH
LSASLGYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEE
WFNEPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSI
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHH
LTLLFTISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGS
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC
GSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVW
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGI
HHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHH
SVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGR
HHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQIHRYRAAQLTTVFHDIFSRKPRHP
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]