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The map label for this gene is ugpB [H]

Identifier: 227081704

GI number: 227081704

Start: 1609060

End: 1610364

Strand: Direct

Name: ugpB [H]

Synonym: VCM66_1490

Alternate gene names: 227081704

Gene position: 1609060-1610364 (Clockwise)

Preceding gene: 227081696

Following gene: 227081705

Centisome position: 55.63

GC content: 48.35

Gene sequence:

>1305_bases
ATGAATAAGGTATGGTTAACCGGTTTGCTTACAGCAACCGCTTCTGGCGTTTTTTCAGCCTCAACATTAGCGGCAACCGA
AATTACTTGGTGGCATGCCATGGGTGGTCAACTGGGTGAAACGGTCAATCAGTTGGCAACTGACTTTAATGCCTCACAAA
GCGACTATAAGCTCACTCCCGTTTATAAAGGTTCGTACACAGAAACATTGACCGCAGGTATTGCGGCGTTTCGTGCTGGC
CAAGCACCCAATATTTTGCAAGTGTTTGATGCTGGTGCCGCCACCATTATGAGCAGTAAAGGCGTTGCCAAACCCGTGCA
AGATCTGATGATCGAGTCAGGCTATCCGTTCACCGCACAAGATTACATTGCTGGGGTACGTAACTTTTATGCCGATAACA
CGGGAAAAATGGTCGGCATGCCATTCAACAGCTCAACGCCTGTGCTGTACTACAACAAAGACATGTTGGCTTCCGTTAAC
GCGCAAGCGCCACAAACTTATGAGCAGCTAGAACAAGTTGCTGCTAAGTTAGCCGAAAAAGGTCAAGCGGGATTTGCCCA
ATCCTTAACGCCGTGGATCATGTTTGAGAACTTCAAATCTCGCCACAACCTACCGCTTTCTGATAAGCAAAATGGCTATC
AAGATCTCTCGACGAAAATCATGTTTAACTCTGACGATATGCTGATGCATGTGAAAAAACTCAAAGAGTGGTCAGATAAA
GGTTACTACAAGTATTACGGCAGTGATTGGGATGCCAACCAAACGCCATTCGAGCGCGGCGAAGTGGCAATGTGGATGGG
CTCTTCTGGCTCATTCGGTGGTCTACGTAACCGCGTGAAATTCAATCTCGGTACGACCTACCTGCCTTACTGGGAATCGG
TCACCAAAAACCCAACCCATACCTTTATTGGTGGCGCCGCGCTGTTTGCACTGCAGGGTCACACTCCAGCGCAGGATAAA
GGTGTCGCAGCTTTCTTCGCTTACCTGACCAAGCCCGAAACGCAAATGAATTGGCATAAAACCACAGGTTATGTGCCCGT
CACCAATGCAGCCTACGACCTGACCAAACAATCGGGCTACTACCAAGAAAACCCGGATGCAGAAGTGGGTGTAAAGCAGC
TTAGCTTGCCTGATGGTGAATGGACCAAAGGCTATCGCCTTGGTTACTACCCACAAGTGCGCGAAGTCATGCATCGCGAG
TTCGATAACATTTTCTCTGGCCGCTCAACTGTCGAGAGCAGCTTGAATAAAGTCGAAGATGAAAGCGCTAAGTTACTGAA
TCGCTTTGCTCGTACCGTGCAATAA

Upstream 100 bases:

>100_bases
TTTTGCCATTTTTCAGCCACGGCACTGTAACTTTTGCTCGCCACTATACCTTCTAACGAAACACAAACAGTCTCGTTCGA
AACTTACAAGGAATGAATCA

Downstream 100 bases:

>100_bases
CCCCAAACGCCGCCAGCATTATCCTGAGATTTTGCTGGCGGCTTGTTATTTTTACTGTCTAATTTGAGTTTTCCTGTGCA
ACGTCGACAACATTTCGCTC

Product: glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MNKVWLTGLLTATASGVFSASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDYKLTPVYKGSYTETLTAGIAAFRAG
QAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQDYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVN
AQAPQTYEQLEQVAAKLAEKGQAGFAQSLTPWIMFENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDK
GYYKYYGSDWDANQTPFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTHTFIGGAALFALQGHTPAQDK
GVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGYYQENPDAEVGVKQLSLPDGEWTKGYRLGYYPQVREVMHRE
FDNIFSGRSTVESSLNKVEDESAKLLNRFARTVQ

Sequences:

>Translated_434_residues
MNKVWLTGLLTATASGVFSASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDYKLTPVYKGSYTETLTAGIAAFRAG
QAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQDYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVN
AQAPQTYEQLEQVAAKLAEKGQAGFAQSLTPWIMFENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDK
GYYKYYGSDWDANQTPFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTHTFIGGAALFALQGHTPAQDK
GVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGYYQENPDAEVGVKQLSLPDGEWTKGYRLGYYPQVREVMHRE
FDNIFSGRSTVESSLNKVEDESAKLLNRFARTVQ
>Mature_434_residues
MNKVWLTGLLTATASGVFSASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDYKLTPVYKGSYTETLTAGIAAFRAG
QAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQDYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVN
AQAPQTYEQLEQVAAKLAEKGQAGFAQSLTPWIMFENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDK
GYYKYYGSDWDANQTPFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTHTFIGGAALFALQGHTPAQDK
GVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGYYQENPDAEVGVKQLSLPDGEWTKGYRLGYYPQVREVMHRE
FDNIFSGRSTVESSLNKVEDESAKLLNRFARTVQ

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=417, Percent_Identity=40.7673860911271, Blast_Score=331, Evalue=7e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48245; Mature: 48245

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVWLTGLLTATASGVFSASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDYKLTP
CCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEE
VYKGSYTETLTAGIAAFRAGQAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQ
EECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCCHH
DYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVNAQAPQTYEQLEQVAAKLAEK
HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCHHHEECCCCCCHHHHHHHHHHHHHHHC
GQAGFAQSLTPWIMFENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDK
CCCCHHHCCCHHEEEHHHHHCCCCCCCCCCCCHHHHCEEEEECCCHHHHHHHHHHHHCCC
GYYKYYGSDWDANQTPFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTH
CCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCEECCCHHHHCCCCCC
TFIGGAALFALQGHTPAQDKGVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGY
EEECCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCEEEECCCHHHHHHCCCC
YQENPDAEVGVKQLSLPDGEWTKGYRLGYYPQVREVMHREFDNIFSGRSTVESSLNKVED
CCCCCCHHHCHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ESAKLLNRFARTVQ
HHHHHHHHHHHHCC
>Mature Secondary Structure
MNKVWLTGLLTATASGVFSASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDYKLTP
CCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEE
VYKGSYTETLTAGIAAFRAGQAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQ
EECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCCHH
DYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVNAQAPQTYEQLEQVAAKLAEK
HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCHHHEECCCCCCHHHHHHHHHHHHHHHC
GQAGFAQSLTPWIMFENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDK
CCCCHHHCCCHHEEEHHHHHCCCCCCCCCCCCHHHHCEEEEECCCHHHHHHHHHHHHCCC
GYYKYYGSDWDANQTPFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTH
CCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCEECCCHHHHCCCCCC
TFIGGAALFALQGHTPAQDKGVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGY
EEECCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCEEEECCCHHHHHHCCCC
YQENPDAEVGVKQLSLPDGEWTKGYRLGYYPQVREVMHREFDNIFSGRSTVESSLNKVED
CCCCCCHHHCHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ESAKLLNRFARTVQ
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA