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The map label for this gene is yebR [H]

Identifier: 227081657

GI number: 227081657

Start: 1557055

End: 1557633

Strand: Reverse

Name: yebR [H]

Synonym: VCM66_1441

Alternate gene names: 227081657

Gene position: 1557633-1557055 (Counterclockwise)

Preceding gene: 227081662

Following gene: 227081656

Centisome position: 53.85

GC content: 43.7

Gene sequence:

>579_bases
GTGTCGTTGAAATACGTCATATTAATGAGAATGCATCCTATTTTAGTGATGCGCATTGTACGTAGTTCGCGAAGTGAAGT
CTTTATTTTTCAAATGGAAGTTATTATGAACCTAGAACAGTACCAACGCCTCACCAAGCAAGCGGTCGCTTTATTAGAAG
GTGAAACCAATCTCATCGCAAACCTTGCCAACTTAAGTGCGTTACTGAATATGGAACTCACCGAGCTCAACTGGGTGGGT
TTTTATTTAATGCAAGAGAACGAGTTGGTATTGGGCCCATTTCAGGGCAAACCCGCTTGCGTGCGCATTCCCGTAGGCAG
GGGAGTTTGTGGTACTGCAGTTGCAGAAAATAAGGTTCAACGTGTGTACGACGTTCATCAATTCGAAGGTCATATTGCTT
GTGATGCCGCGAGTAACTCAGAAATCGTTATCCCATTCTCGATTAACGGAAAAGTCGCCGGAGTGTTGGACATTGACAGT
CCAAACATTGGTCGTTTCAGTGAAATTGACGAGCAAGGCCTAACCTATTTGATGAGCGAAGTAGAAAAGCTGCTCAATTC
ACAGGCTAATAAGGCATAA

Upstream 100 bases:

>100_bases
AGGAACACTGATTAGCGTCGCGACGACGGCAATAAAGTTAGCAAACAACAGTTTGGCGCGATGTTTTTTTACTTGAGTTA
TCAGCCAAGAGCGGCTAATA

Downstream 100 bases:

>100_bases
ATTGCCCTTTGCCTGTGGTTTTTCCTTTGCAGGTCTTTATAATACCGCACATATTTACACATCAATGTTTGGCGGGCAGC
CGCAATAACCAGGAATCCTC

Product: GAF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSLKYVILMRMHPILVMRIVRSSRSEVFIFQMEVIMNLEQYQRLTKQAVALLEGETNLIANLANLSALLNMELTELNWVG
FYLMQENELVLGPFQGKPACVRIPVGRGVCGTAVAENKVQRVYDVHQFEGHIACDAASNSEIVIPFSINGKVAGVLDIDS
PNIGRFSEIDEQGLTYLMSEVEKLLNSQANKA

Sequences:

>Translated_192_residues
MSLKYVILMRMHPILVMRIVRSSRSEVFIFQMEVIMNLEQYQRLTKQAVALLEGETNLIANLANLSALLNMELTELNWVG
FYLMQENELVLGPFQGKPACVRIPVGRGVCGTAVAENKVQRVYDVHQFEGHIACDAASNSEIVIPFSINGKVAGVLDIDS
PNIGRFSEIDEQGLTYLMSEVEKLLNSQANKA
>Mature_191_residues
SLKYVILMRMHPILVMRIVRSSRSEVFIFQMEVIMNLEQYQRLTKQAVALLEGETNLIANLANLSALLNMELTELNWVGF
YLMQENELVLGPFQGKPACVRIPVGRGVCGTAVAENKVQRVYDVHQFEGHIACDAASNSEIVIPFSINGKVAGVLDIDSP
NIGRFSEIDEQGLTYLMSEVEKLLNSQANKA

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=153, Percent_Identity=60.7843137254902, Blast_Score=199, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6322781, Length=145, Percent_Identity=43.448275862069, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 21431; Mature: 21300

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKYVILMRMHPILVMRIVRSSRSEVFIFQMEVIMNLEQYQRLTKQAVALLEGETNLIA
CCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEHHHHHCHHHHHHHHHHHHHHHCCCHHHHH
NLANLSALLNMELTELNWVGFYLMQENELVLGPFQGKPACVRIPVGRGVCGTAVAENKVQ
HHHHHHHHHCCEEEEEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHH
RVYDVHQFEGHIACDAASNSEIVIPFSINGKVAGVLDIDSPNIGRFSEIDEQGLTYLMSE
HHHHHHHCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
VEKLLNSQANKA
HHHHHHCCCCCC
>Mature Secondary Structure 
SLKYVILMRMHPILVMRIVRSSRSEVFIFQMEVIMNLEQYQRLTKQAVALLEGETNLIA
CCEEEEEHHHHHHHHHHHHHCCCCEEEEEEHHHHHCHHHHHHHHHHHHHHHCCCHHHHH
NLANLSALLNMELTELNWVGFYLMQENELVLGPFQGKPACVRIPVGRGVCGTAVAENKVQ
HHHHHHHHHCCEEEEEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHH
RVYDVHQFEGHIACDAASNSEIVIPFSINGKVAGVLDIDSPNIGRFSEIDEQGLTYLMSE
HHHHHHHCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
VEKLLNSQANKA
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 10493123 [H]