Click here to switch to the map view.

The map label for this gene is ycbZ [H]

Identifier: 227081641

GI number: 227081641

Start: 1534366

End: 1536162

Strand: Direct

Name: ycbZ [H]

Synonym: VCM66_1425

Alternate gene names: 227081641

Gene position: 1534366-1536162 (Clockwise)

Preceding gene: 227081637

Following gene: 227081642

Centisome position: 53.05

GC content: 43.91

Gene sequence:

>1797_bases
TTGTTATACAGTGACAGCGTAACCCACTGTCTGCAGACTTGCAATTCTCCCTATCAAAAAAGCGAGAAAGATCATCGTCG
ACTTTCACTGTTCGCTGCTCGGCTTTTTCTATATAATTTGGCTCTTTTCAATCAGTTCGATATCTCAATGACCCAAAGCA
TCTGGCGCAGTGTAACGCCTCAATTTGAGCAGTTTAACAAAGTCTTTGAAAACTACCCTAACCTAGCTCCCATTTCACTG
ATCGAGATTCAGCCTCGTTTAACCAGTGCGCTTGAACAGTTTGTTCACCTTAAAGGGTTTAGTCGAATCCTCTTGATTAA
TGCTCCCGATAACTCGATTTATCGCTCTCTCTTTAAAGACGCATTACTTGAGCAGGATCTTGATGTTCCTGTCGTGAGTA
CAGAGACGTTAGATATTTCAGAGATTCTAGGCCAAGTCAAAGTTGAGCATGGTGGTCTAGTTCATAAAACGTCAGGATAT
CTCGAACAAGCGAATGGCGGTTATTTGATTGTTTCAGCGAATTTATTGCTGGCTAATCCACGCTATTGGCCAACAGTAAA
AGCCGCCGTTTTGGGTGAAACTGTCTCTCCTATCAATTGCGATCCAAAATCTCCGCTCCCTAATCGCTTAGGTTCAAGTT
ACGACGTTAAACTTATTGTTGTCGGTGATCGCACGCAGCTTGGCGATCTGGATTTTTTAGATGCTGATATTCATTCCGGC
TTATGTTTGTTTTCAGAGCTTGAATTAGATCTCAAGATAGAAGAAGAAACGATTGAAGACTACCTCGGCTACTTACGCTG
GTTGTGTGAACAGTACAATTTGCCTTCATTAACCTGCTCTGCCATCCAGTCTCTGATGACGGCCGGTGCTCGTTATACTG
AAGATCAACATTACGCTCCCCTTTGTTTAATGTGGCATCGAGCGCTACTTGAAGAAGCTCGCCTTGAATCTGAAGAGCCG
TTGATTGACGCTGAACATATTGAAATTGCTTTAGATAAACGCTATCTGCGCGAGTCTTATTTACCCGAAAGAGCTCTAGA
CGACATTCTTGACGGTCAAGTGATCATCGAAACCCAGGGTGAACAAGTCGGGCAAGTTAATGGCTTGACAGTCATCGAAG
TCACTGGGCACCCAATGCCTTACGGTGAGCCAGCTCGAATTTCCTGTGTGATCCATTTTGGTGATGGTGACATTGCGGAT
GTAGAGAGAAAAGTTGAGTTAGGCGGCAACCTTCATGCTAAAGGTATGATGATTATGCAAGCTTTTGTGAGTAGTGCCTT
GAATCTTGATGGTTCTCTGCCCTTTTCTGCTTCGATTGTTTTTGAGCAGTCTTATAGTGAAGTTGATGGTGATAGCGCTT
CACTGGCGGAATTATGTTCATTAGTGAGTGCGCTTTCTGAGTATCCGATTGACCAACAGATTGCCGTTACTGGCGCTGTT
GACCAATTTGGACGAGTTCAAGCGGTCGGTGGTCTGAATGAAAAAATTGAAGGATTTTATCGCGTCTGTTGTCACCAAGG
CTTAACTGGAGAACAGGGGGTGATTTTGCCAAGTTCGAACCTGAAACACTTGGCGCTTCATAAATCAGTAGTAGAAAGCA
TTAAGAATGGTGAATTCAACATCTGGCCTGTTTCGACGGTGGATGAAGCGATTCCTCTTCTCATGGGTAAACCTTTCCGT
GGAGAAGATGAAGACAGCGTGATCGCAAAGATCGCTGAAAGAATTGATAATTTTGAAAAACTTGTGCAACCGCACGGAAT
TGTGGAACGGATCAAAAACTGGCTTAGCTGGCACTGA

Upstream 100 bases:

>100_bases
AACGGGCTCTCCATCCTTCCATTTATTGATGAGATACTGCCATTTCCAACCACATTCTAAATTTTCAAGTTGTTGATATT
TCATCTTCGGCCACTTTCCA

Downstream 100 bases:

>100_bases
TCGGAGTTGTTTGGCGTACACGTGTTCACTAACATGCACCCAACAAAAAATGGAGTAACCAATAATGCAGAACAAACGTG
ATTCGTATAATCGAGAAGAT

Product: ATP-dependent protease LA-related protein

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 598; Mature: 598

Protein sequence:

>598_residues
MLYSDSVTHCLQTCNSPYQKSEKDHRRLSLFAARLFLYNLALFNQFDISMTQSIWRSVTPQFEQFNKVFENYPNLAPISL
IEIQPRLTSALEQFVHLKGFSRILLINAPDNSIYRSLFKDALLEQDLDVPVVSTETLDISEILGQVKVEHGGLVHKTSGY
LEQANGGYLIVSANLLLANPRYWPTVKAAVLGETVSPINCDPKSPLPNRLGSSYDVKLIVVGDRTQLGDLDFLDADIHSG
LCLFSELELDLKIEEETIEDYLGYLRWLCEQYNLPSLTCSAIQSLMTAGARYTEDQHYAPLCLMWHRALLEEARLESEEP
LIDAEHIEIALDKRYLRESYLPERALDDILDGQVIIETQGEQVGQVNGLTVIEVTGHPMPYGEPARISCVIHFGDGDIAD
VERKVELGGNLHAKGMMIMQAFVSSALNLDGSLPFSASIVFEQSYSEVDGDSASLAELCSLVSALSEYPIDQQIAVTGAV
DQFGRVQAVGGLNEKIEGFYRVCCHQGLTGEQGVILPSSNLKHLALHKSVVESIKNGEFNIWPVSTVDEAIPLLMGKPFR
GEDEDSVIAKIAERIDNFEKLVQPHGIVERIKNWLSWH

Sequences:

>Translated_598_residues
MLYSDSVTHCLQTCNSPYQKSEKDHRRLSLFAARLFLYNLALFNQFDISMTQSIWRSVTPQFEQFNKVFENYPNLAPISL
IEIQPRLTSALEQFVHLKGFSRILLINAPDNSIYRSLFKDALLEQDLDVPVVSTETLDISEILGQVKVEHGGLVHKTSGY
LEQANGGYLIVSANLLLANPRYWPTVKAAVLGETVSPINCDPKSPLPNRLGSSYDVKLIVVGDRTQLGDLDFLDADIHSG
LCLFSELELDLKIEEETIEDYLGYLRWLCEQYNLPSLTCSAIQSLMTAGARYTEDQHYAPLCLMWHRALLEEARLESEEP
LIDAEHIEIALDKRYLRESYLPERALDDILDGQVIIETQGEQVGQVNGLTVIEVTGHPMPYGEPARISCVIHFGDGDIAD
VERKVELGGNLHAKGMMIMQAFVSSALNLDGSLPFSASIVFEQSYSEVDGDSASLAELCSLVSALSEYPIDQQIAVTGAV
DQFGRVQAVGGLNEKIEGFYRVCCHQGLTGEQGVILPSSNLKHLALHKSVVESIKNGEFNIWPVSTVDEAIPLLMGKPFR
GEDEDSVIAKIAERIDNFEKLVQPHGIVERIKNWLSWH
>Mature_598_residues
MLYSDSVTHCLQTCNSPYQKSEKDHRRLSLFAARLFLYNLALFNQFDISMTQSIWRSVTPQFEQFNKVFENYPNLAPISL
IEIQPRLTSALEQFVHLKGFSRILLINAPDNSIYRSLFKDALLEQDLDVPVVSTETLDISEILGQVKVEHGGLVHKTSGY
LEQANGGYLIVSANLLLANPRYWPTVKAAVLGETVSPINCDPKSPLPNRLGSSYDVKLIVVGDRTQLGDLDFLDADIHSG
LCLFSELELDLKIEEETIEDYLGYLRWLCEQYNLPSLTCSAIQSLMTAGARYTEDQHYAPLCLMWHRALLEEARLESEEP
LIDAEHIEIALDKRYLRESYLPERALDDILDGQVIIETQGEQVGQVNGLTVIEVTGHPMPYGEPARISCVIHFGDGDIAD
VERKVELGGNLHAKGMMIMQAFVSSALNLDGSLPFSASIVFEQSYSEVDGDSASLAELCSLVSALSEYPIDQQIAVTGAV
DQFGRVQAVGGLNEKIEGFYRVCCHQGLTGEQGVILPSSNLKHLALHKSVVESIKNGEFNIWPVSTVDEAIPLLMGKPFR
GEDEDSVIAKIAERIDNFEKLVQPHGIVERIKNWLSWH

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=590, Percent_Identity=38.6440677966102, Blast_Score=410, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 66713; Mature: 66713

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYSDSVTHCLQTCNSPYQKSEKDHRRLSLFAARLFLYNLALFNQFDISMTQSIWRSVTP
CCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
QFEQFNKVFENYPNLAPISLIEIQPRLTSALEQFVHLKGFSRILLINAPDNSIYRSLFKD
CHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
ALLEQDLDVPVVSTETLDISEILGQVKVEHGGLVHKTSGYLEQANGGYLIVSANLLLANP
HHHHCCCCCCEEECCCCCHHHHHHHEECCCCCEEEECCCCCEECCCCEEEEECCEEEECC
RYWPTVKAAVLGETVSPINCDPKSPLPNRLGSSYDVKLIVVGDRTQLGDLDFLDADIHSG
CCCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHCC
LCLFSELELDLKIEEETIEDYLGYLRWLCEQYNLPSLTCSAIQSLMTAGARYTEDQHYAP
EEEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
LCLMWHRALLEEARLESEEPLIDAEHIEIALDKRYLRESYLPERALDDILDGQVIIETQG
HHHHHHHHHHHHHHCCCCCCCCCHHHHEEHHHHHHHHHHCCCHHHHHHHHCCEEEEEECC
EQVGQVNGLTVIEVTGHPMPYGEPARISCVIHFGDGDIADVERKVELGGNLHAKGMMIMQ
CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHH
AFVSSALNLDGSLPFSASIVFEQSYSEVDGDSASLAELCSLVSALSEYPIDQQIAVTGAV
HHHHHHHCCCCCCCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
DQFGRVQAVGGLNEKIEGFYRVCCHQGLTGEQGVILPSSNLKHLALHKSVVESIKNGEFN
HHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEE
IWPVSTVDEAIPLLMGKPFRGEDEDSVIAKIAERIDNFEKLVQPHGIVERIKNWLSWH
EEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLYSDSVTHCLQTCNSPYQKSEKDHRRLSLFAARLFLYNLALFNQFDISMTQSIWRSVTP
CCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
QFEQFNKVFENYPNLAPISLIEIQPRLTSALEQFVHLKGFSRILLINAPDNSIYRSLFKD
CHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
ALLEQDLDVPVVSTETLDISEILGQVKVEHGGLVHKTSGYLEQANGGYLIVSANLLLANP
HHHHCCCCCCEEECCCCCHHHHHHHEECCCCCEEEECCCCCEECCCCEEEEECCEEEECC
RYWPTVKAAVLGETVSPINCDPKSPLPNRLGSSYDVKLIVVGDRTQLGDLDFLDADIHSG
CCCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHCC
LCLFSELELDLKIEEETIEDYLGYLRWLCEQYNLPSLTCSAIQSLMTAGARYTEDQHYAP
EEEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
LCLMWHRALLEEARLESEEPLIDAEHIEIALDKRYLRESYLPERALDDILDGQVIIETQG
HHHHHHHHHHHHHHCCCCCCCCCHHHHEEHHHHHHHHHHCCCHHHHHHHHCCEEEEEECC
EQVGQVNGLTVIEVTGHPMPYGEPARISCVIHFGDGDIADVERKVELGGNLHAKGMMIMQ
CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHH
AFVSSALNLDGSLPFSASIVFEQSYSEVDGDSASLAELCSLVSALSEYPIDQQIAVTGAV
HHHHHHHCCCCCCCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
DQFGRVQAVGGLNEKIEGFYRVCCHQGLTGEQGVILPSSNLKHLALHKSVVESIKNGEFN
HHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEE
IWPVSTVDEAIPLLMGKPFRGEDEDSVIAKIAERIDNFEKLVQPHGIVERIKNWLSWH
EEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]