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The map label for this gene is yedQ [H]

Identifier: 227081547

GI number: 227081547

Start: 1426841

End: 1428454

Strand: Direct

Name: yedQ [H]

Synonym: VCM66_1331

Alternate gene names: 227081547

Gene position: 1426841-1428454 (Clockwise)

Preceding gene: 227081543

Following gene: 227081548

Centisome position: 49.33

GC content: 45.23

Gene sequence:

>1614_bases
ATGATAGATAACATAATAAGGAAGAAGTGGATGCTCAAACATGTGCGCGTGATTGTGCCCTTGCTGGTACTGTTGTTTTC
TCTGCTTCTGACTGTGTTTGTGGTTTACACCGCATACTCATTACAGCTGCGCCATAATCGTACTCTGCTGGAAAACCTTG
CGGATAGGCAAACTATGGCACTGCAACAGTTTGTCGATGGTGATATCCATTTTATCGGCTCTGCCGCCAACTTTTTCCGC
TCAAGCACAAGCGATGACTGGGTGCGTTTTCACACTTTCGCAGAAGAGACTCTTAAAGGTTCACAAAGCCTGATTGCTTT
ACAATGGTTAGTGAAAGTTGAGCCGCCTCAGGCTGAAACTTTTACCGCGCGAATGCAGCAACGTTTTCCTGAGTTCACTT
TGTACACGGTGCCAAAAACGGGAGAGATCAAATACGGTTTCGGTACGGATGACCAAGCGAAATACGTTTTATCGGATATT
TATCCACTCAATTATGACAATCGTAAACTGTTAGGCTTTTACTCGGAGCGTGAACGTTTCAAACGAATACTGGCGGATAT
TGTCGTTAATCGTCGGCCGAATGTTTCGGATAAAGTGCGCCTGCTACAAGATGGGATTGATAAGTCGATCGTCAAAGATG
GCATGTTGGTCTATCACCCTGTTTTTTCTTCAGAAGATGATCGCAGCTTACTTGGTGTGATGGTCGGGGTGGTGCGCCTA
TCCACCTATTTCGAGAAACTGGTCCAAATCAGCGTCATGGAACAAGATCTCGATATGCGCGTGATTGACACCGGATTTGA
TTCGGAAGACAGTCCGGTTCTTTATCAAAGCCCGATGTGGCGAGCGGATGATGAACCCAAAATAGAGCGCAAATTGGTGT
TGCCAAACCGTGATTGGGTGCTGGAGTTTGAACTGCATCAGCCGATTAACCATAGTGAAGAGTGGGTGCTACTGGGCTTA
GGGTTGGGTGGCGTTATTATTTCTCTGCTGCTTAGCTACATCATGCGAATGCAACTGGAAGAGAAACAACGGCTGACAGA
TATGATTGAGGAGCGTACCGCAGAGCTGCGTTATCTGGTGGAGCATGACAGTTTGACCAACATCTATAACCGCCGCTTCT
TTAGTCAGCATTTGTGCAAAATGTTAGATGAAAAACAATCCTTTACCTTGATTTCATTTGATATCGACCGCTTTAAGCAA
ATCAACGACAGCTATGGGCATTTAGCGGGGGATTACGCTTTAACGCATGTGGTTGATGTGGTCAAAAAAGAGTTGGTTGA
ATCGGATATTTTTGCCCGTTTCGGCGGTGATGAGTTTGCCATCTTGTCATCCGTTACTGATGAAACGGCGCTTTATACTT
ATCTAGAGCGGATCCGTAAAGTGGTCGAAGCAGAACCTGTGATGCTCAATGCCGAGACACCATTAACCTTAACCATCAGT
ATTGGGGCGAGCATTAACTGTGAGTACAGTGAGCCGGAAATTTTACAGAGTGTTGATGATCAGCTCTATCTCAGTAAATC
GAAAGGTCGAAATCGTGTATCGATTGCGCAGCAATGCAGCAAGGTAGAATCGAATTATGCCTTCAATTCAGGTAGGATGT
TCGACTTTATGTAA

Upstream 100 bases:

>100_bases
GCGCTCGGTTTATCACTGAATGCTCTGAAAATGACTTGAATCTAGCGTCCCAACTGAAGTAAGGATATTGATATATCACA
CATCTTCATCATGATTTTTC

Downstream 100 bases:

>100_bases
CAGAGAAAGAGCCAAGAATGAATTACAACCGTGTTGTGTGCTTCGATTTAGAAATGTGTTGTTGGAACGAAAACGGAGTG
GGAACCACGGGTGAAATCAT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MIDNIIRKKWMLKHVRVIVPLLVLLFSLLLTVFVVYTAYSLQLRHNRTLLENLADRQTMALQQFVDGDIHFIGSAANFFR
SSTSDDWVRFHTFAEETLKGSQSLIALQWLVKVEPPQAETFTARMQQRFPEFTLYTVPKTGEIKYGFGTDDQAKYVLSDI
YPLNYDNRKLLGFYSERERFKRILADIVVNRRPNVSDKVRLLQDGIDKSIVKDGMLVYHPVFSSEDDRSLLGVMVGVVRL
STYFEKLVQISVMEQDLDMRVIDTGFDSEDSPVLYQSPMWRADDEPKIERKLVLPNRDWVLEFELHQPINHSEEWVLLGL
GLGGVIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQ
INDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTIS
IGASINCEYSEPEILQSVDDQLYLSKSKGRNRVSIAQQCSKVESNYAFNSGRMFDFM

Sequences:

>Translated_537_residues
MIDNIIRKKWMLKHVRVIVPLLVLLFSLLLTVFVVYTAYSLQLRHNRTLLENLADRQTMALQQFVDGDIHFIGSAANFFR
SSTSDDWVRFHTFAEETLKGSQSLIALQWLVKVEPPQAETFTARMQQRFPEFTLYTVPKTGEIKYGFGTDDQAKYVLSDI
YPLNYDNRKLLGFYSERERFKRILADIVVNRRPNVSDKVRLLQDGIDKSIVKDGMLVYHPVFSSEDDRSLLGVMVGVVRL
STYFEKLVQISVMEQDLDMRVIDTGFDSEDSPVLYQSPMWRADDEPKIERKLVLPNRDWVLEFELHQPINHSEEWVLLGL
GLGGVIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQ
INDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTIS
IGASINCEYSEPEILQSVDDQLYLSKSKGRNRVSIAQQCSKVESNYAFNSGRMFDFM
>Mature_537_residues
MIDNIIRKKWMLKHVRVIVPLLVLLFSLLLTVFVVYTAYSLQLRHNRTLLENLADRQTMALQQFVDGDIHFIGSAANFFR
SSTSDDWVRFHTFAEETLKGSQSLIALQWLVKVEPPQAETFTARMQQRFPEFTLYTVPKTGEIKYGFGTDDQAKYVLSDI
YPLNYDNRKLLGFYSERERFKRILADIVVNRRPNVSDKVRLLQDGIDKSIVKDGMLVYHPVFSSEDDRSLLGVMVGVVRL
STYFEKLVQISVMEQDLDMRVIDTGFDSEDSPVLYQSPMWRADDEPKIERKLVLPNRDWVLEFELHQPINHSEEWVLLGL
GLGGVIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQ
INDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTIS
IGASINCEYSEPEILQSVDDQLYLSKSKGRNRVSIAQQCSKVESNYAFNSGRMFDFM

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG3614

COG function: function code T; Predicted periplasmic ligand-binding sensor domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=199, Percent_Identity=34.6733668341709, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=34.7305389221557, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=174, Percent_Identity=34.4827586206897, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=33.5365853658537, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=33.9506172839506, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=30.8988764044944, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=35.4037267080745, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=30.8571428571429, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=36.3636363636364, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=84, Percent_Identity=39.2857142857143, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=29.0502793296089, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=30.188679245283, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 62208; Mature: 62208

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50839 CHASE ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDNIIRKKWMLKHVRVIVPLLVLLFSLLLTVFVVYTAYSLQLRHNRTLLENLADRQTMA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHH
LQQFVDGDIHFIGSAANFFRSSTSDDWVRFHTFAEETLKGSQSLIALQWLVKVEPPQAET
HHHHHCCCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHEEEEEEEEECCCCCHH
FTARMQQRFPEFTLYTVPKTGEIKYGFGTDDQAKYVLSDIYPLNYDNRKLLGFYSERERF
HHHHHHHHCCCEEEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHH
KRILADIVVNRRPNVSDKVRLLQDGIDKSIVKDGMLVYHPVFSSEDDRSLLGVMVGVVRL
HHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
STYFEKLVQISVMEQDLDMRVIDTGFDSEDSPVLYQSPMWRADDEPKIERKLVLPNRDWV
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCEE
LEFELHQPINHSEEWVLLGLGLGGVIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLV
EEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHDSLTNIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHH
VKKELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTIS
HHHHHHHHHHHHHCCCCCEEEEHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
IGASINCEYSEPEILQSVDDQLYLSKSKGRNRVSIAQQCSKVESNYAFNSGRMFDFM
ECCEEECCCCCCHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHHCCEECCCCEECCC
>Mature Secondary Structure
MIDNIIRKKWMLKHVRVIVPLLVLLFSLLLTVFVVYTAYSLQLRHNRTLLENLADRQTMA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHH
LQQFVDGDIHFIGSAANFFRSSTSDDWVRFHTFAEETLKGSQSLIALQWLVKVEPPQAET
HHHHHCCCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHEEEEEEEEECCCCCHH
FTARMQQRFPEFTLYTVPKTGEIKYGFGTDDQAKYVLSDIYPLNYDNRKLLGFYSERERF
HHHHHHHHCCCEEEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHH
KRILADIVVNRRPNVSDKVRLLQDGIDKSIVKDGMLVYHPVFSSEDDRSLLGVMVGVVRL
HHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
STYFEKLVQISVMEQDLDMRVIDTGFDSEDSPVLYQSPMWRADDEPKIERKLVLPNRDWV
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCEE
LEFELHQPINHSEEWVLLGLGLGGVIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLV
EEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHDSLTNIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHH
VKKELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTIS
HHHHHHHHHHHHHCCCCCEEEEHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
IGASINCEYSEPEILQSVDDQLYLSKSKGRNRVSIAQQCSKVESNYAFNSGRMFDFM
ECCEEECCCCCCHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHHCCEECCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]