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The map label for this gene is yaiC [C]

Identifier: 227081541

GI number: 227081541

Start: 1417192

End: 1418523

Strand: Direct

Name: yaiC [C]

Synonym: VCM66_1325

Alternate gene names: 227081541

Gene position: 1417192-1418523 (Clockwise)

Preceding gene: 227081540

Following gene: 227081543

Centisome position: 49.0

GC content: 44.29

Gene sequence:

>1332_bases
TTGATCAACTCATTAAACCGCAAAATGACGTTACTGTTTATTGCATCACTGCTGTTAGTTGGTTTTATTGCTTTCTCATT
ACTGAACTTAGATCAGCGGCAGCAGCAAACCAATGCTGAGCTGGATACGATTTTGGAAATCCAAAACAGCATTGCCATGT
TGCGTAGCCAGCTCTGGGTCTTTCTGCAATACAACGATGCTCATAGCTTAGAGCAGGTTTATCGTGCGCAGCAGGTTTTG
GCTGGGCAGCTCGAGATGGAAACGGTCTTTGGGCAACACTTAGCCGGCATCCAAAGAATGAATAACAGTTTAGCCGGGCT
ATTAGAACAAGAGCGCTACATGGCCGAAGAATCGGGCATTACTAAGTTGGTCGATGGCATCGGAACTTATGAGCTACTTC
ACTCTCGATACAATATTTTGGTGCAAAACATGAATGAGGAGTTGGCCTATTTTCAGCGTCAAGTCATGGAAGAGAGCATT
AATAATCAACGCTATTTATTGTTAACCACCATGGCGCACTTACTGCTCTTCTCATCGGTTGTCTGTGGTATCGCGCTGGT
GGTGTTACGCCGCTTCCGACATGGATGTAAAACTCTCCAAGAAGGGATTGAACAAATGGCGAAAGGGGATCTCGCCAGCC
GAATTTCCACTCAAAATAATGAACAAGAGTTTGTTCAATTAACTCAGTTTTTCAATCAAATGAAGGCTTCGCTGCAAAGC
ACAACCGTTACCAAAGATGAGTTACAAGCGGAAGTGGCAAGAAAAACCGCCAAATTAGAGCGTCAAAAAGCGGAATTACG
TTTCTTGTCAGAAAGAGATTCATTGACAGGTATTTTGAACCGCCGTGCCTTTAAACAGCAGCTTAGTCACGCGTTAATTA
AAGCGAAGCGCTCAAACATGAAGCTGGCTTTGCTGTTTTTTGACTTAGATAAATTTAAAGAAATCAATGACACCAAAGGG
CACGAAGTAGGTGATCTTGTCTTGCAAGAAATCGCTCAACGGCTCAAAGGGTCGATACGAGAATCGGATTTTTGTGGGCG
CTTAGGGGGGGATGAATTTGTGGTATGCCTAGATCTGCTGCAGGATCACAGTGGCGTTATCAATAAGGCTTATCAGATGC
TAGAAAAACTACAAAAGCCGCTTCAACTTAACCAAGAGAGCTTAGAGATTGGGGTGAGTATTGGTGTCGCCTTATATCCA
GAGCAAGCGACCCAAGTACCTGAATTATTGCGTATTGCTGATGAGGCGATGTACACCGCAAAACATCAATCCGGCAATAC
GGTGTATTGCGCCCACCAAGATAAGCACGATCACACCAGTTTAGTGAGCTGA

Upstream 100 bases:

>100_bases
CATTAGAAAACAAGTTAGTGCATGGTCAATTGCCCGATTATCGGCAATTAATGGCTGACGACCTGTTGAGCGAAGCGGTG
AAAAACGATGGAGGCCAGCC

Downstream 100 bases:

>100_bases
TGCACAAAGGCCGCAGCAACGGGATCAGAATTTGGTTGCTGCGGTTTCTGTCATGACGATGAGTAGCGCGCGTTTTTGGG
CGCTGCGGGTCTCGCGTGAA

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MINSLNRKMTLLFIASLLLVGFIAFSLLNLDQRQQQTNAELDTILEIQNSIAMLRSQLWVFLQYNDAHSLEQVYRAQQVL
AGQLEMETVFGQHLAGIQRMNNSLAGLLEQERYMAEESGITKLVDGIGTYELLHSRYNILVQNMNEELAYFQRQVMEESI
NNQRYLLLTTMAHLLLFSSVVCGIALVVLRRFRHGCKTLQEGIEQMAKGDLASRISTQNNEQEFVQLTQFFNQMKASLQS
TTVTKDELQAEVARKTAKLERQKAELRFLSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKG
HEVGDLVLQEIAQRLKGSIRESDFCGRLGGDEFVVCLDLLQDHSGVINKAYQMLEKLQKPLQLNQESLEIGVSIGVALYP
EQATQVPELLRIADEAMYTAKHQSGNTVYCAHQDKHDHTSLVS

Sequences:

>Translated_443_residues
MINSLNRKMTLLFIASLLLVGFIAFSLLNLDQRQQQTNAELDTILEIQNSIAMLRSQLWVFLQYNDAHSLEQVYRAQQVL
AGQLEMETVFGQHLAGIQRMNNSLAGLLEQERYMAEESGITKLVDGIGTYELLHSRYNILVQNMNEELAYFQRQVMEESI
NNQRYLLLTTMAHLLLFSSVVCGIALVVLRRFRHGCKTLQEGIEQMAKGDLASRISTQNNEQEFVQLTQFFNQMKASLQS
TTVTKDELQAEVARKTAKLERQKAELRFLSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKG
HEVGDLVLQEIAQRLKGSIRESDFCGRLGGDEFVVCLDLLQDHSGVINKAYQMLEKLQKPLQLNQESLEIGVSIGVALYP
EQATQVPELLRIADEAMYTAKHQSGNTVYCAHQDKHDHTSLVS
>Mature_443_residues
MINSLNRKMTLLFIASLLLVGFIAFSLLNLDQRQQQTNAELDTILEIQNSIAMLRSQLWVFLQYNDAHSLEQVYRAQQVL
AGQLEMETVFGQHLAGIQRMNNSLAGLLEQERYMAEESGITKLVDGIGTYELLHSRYNILVQNMNEELAYFQRQVMEESI
NNQRYLLLTTMAHLLLFSSVVCGIALVVLRRFRHGCKTLQEGIEQMAKGDLASRISTQNNEQEFVQLTQFFNQMKASLQS
TTVTKDELQAEVARKTAKLERQKAELRFLSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKG
HEVGDLVLQEIAQRLKGSIRESDFCGRLGGDEFVVCLDLLQDHSGVINKAYQMLEKLQKPLQLNQESLEIGVSIGVALYP
EQATQVPELLRIADEAMYTAKHQSGNTVYCAHQDKHDHTSLVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=35.7142857142857, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=35.5421686746988, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=34.1176470588235, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788956, Length=270, Percent_Identity=31.8518518518519, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI87081974, Length=149, Percent_Identity=38.255033557047, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=33.8888888888889, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.9268292682927, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=30.939226519337, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=198, Percent_Identity=31.3131313131313, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=187, Percent_Identity=32.0855614973262, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=28.6516853932584, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=29.5180722891566, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787056, Length=150, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=29.2397660818713, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 50430; Mature: 50430

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSLNRKMTLLFIASLLLVGFIAFSLLNLDQRQQQTNAELDTILEIQNSIAMLRSQLWV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEE
FLQYNDAHSLEQVYRAQQVLAGQLEMETVFGQHLAGIQRMNNSLAGLLEQERYMAEESGI
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TKLVDGIGTYELLHSRYNILVQNMNEELAYFQRQVMEESINNQRYLLLTTMAHLLLFSSV
HHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
VCGIALVVLRRFRHGCKTLQEGIEQMAKGDLASRISTQNNEQEFVQLTQFFNQMKASLQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TTVTKDELQAEVARKTAKLERQKAELRFLSERDSLTGILNRRAFKQQLSHALIKAKRSNM
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KLALLFFDLDKFKEINDTKGHEVGDLVLQEIAQRLKGSIRESDFCGRLGGDEFVVCLDLL
EEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QDHSGVINKAYQMLEKLQKPLQLNQESLEIGVSIGVALYPEQATQVPELLRIADEAMYTA
HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHH
KHQSGNTVYCAHQDKHDHTSLVS
HCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MINSLNRKMTLLFIASLLLVGFIAFSLLNLDQRQQQTNAELDTILEIQNSIAMLRSQLWV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEE
FLQYNDAHSLEQVYRAQQVLAGQLEMETVFGQHLAGIQRMNNSLAGLLEQERYMAEESGI
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TKLVDGIGTYELLHSRYNILVQNMNEELAYFQRQVMEESINNQRYLLLTTMAHLLLFSSV
HHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
VCGIALVVLRRFRHGCKTLQEGIEQMAKGDLASRISTQNNEQEFVQLTQFFNQMKASLQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TTVTKDELQAEVARKTAKLERQKAELRFLSERDSLTGILNRRAFKQQLSHALIKAKRSNM
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KLALLFFDLDKFKEINDTKGHEVGDLVLQEIAQRLKGSIRESDFCGRLGGDEFVVCLDLL
EEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QDHSGVINKAYQMLEKLQKPLQLNQESLEIGVSIGVALYPEQATQVPELLRIADEAMYTA
HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHH
KHQSGNTVYCAHQDKHDHTSLVS
HCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]