Click here to switch to the map view.

The map label for this gene is ydjN [H]

Identifier: 227081407

GI number: 227081407

Start: 1266198

End: 1267613

Strand: Reverse

Name: ydjN [H]

Synonym: VCM66_1190

Alternate gene names: 227081407

Gene position: 1267613-1266198 (Counterclockwise)

Preceding gene: 227081415

Following gene: 227081406

Centisome position: 43.82

GC content: 50.42

Gene sequence:

>1416_bases
ATGGCCGTTGTTACTCTCCTTCCCCCTTTTAAGGATTTGCTTATGTCAGTGGTTACCCTTGCAGCACTGGTGATTTTCGC
CGGTCTATTGCTCTATCTGTTTGGGCTACAGAAAAAAGCCGCCACCCTTTCTCGTCAAGTTTTGTTTGGTTTAGTACTAG
GTAGTGCATTTGGTTTGGCACTGCAAGTAGTGCTCGGTGAAGGCCATCCCGCTATTCAAGAAACCCTATCTTGGGTTGCT
ATCGTCGGCAATGGCTACGTGGGTCTACTGAAAATGGTCATCATGCCACTGGTGCTGGTATCGATGATCTCTGCCGTGGT
ACGTCTGGATAAAAACGGTTCACTGGGCAAAATCTCCAGTCTGACTATCGGTATTTTGCTGGTGACTACTGCGATTTCTG
CGCTGATCGGTATTCTCATCACTCAAGCATTTGGCCTGACGGCTGAAGGTTTGGTTGAAGGCGCACGCGAAACCGCACGT
ATTGCAGCACTTGAAAGCCGCGCATCAACGGTTGCCGACCTAACGATTCCACAAATTCTGTTGAGCTTTATCCCAACCAA
CCCCTTTGCCGATTTAACCGGCGCACGTTCAACCTCCATCATCGCGGTGGTGATTTTCGGCGTGCTCACTGGTATTGCCG
CACGCAAAGTGATTGCCGATAAACAAGAGTTAGAAACGCCAATTCGCACTTTTGTTGAAGCAGCACAAGCGATTGTGATG
CGTTTAGTGAAAATGATCATGGCGCTGACACCTTACGGTATCGCCGCGCTGATGGCGAAAGTCGTCGCGACATCCAGTGC
TACCGACATTCTGAACTTGCTCGGTTTCATTGTGGCTTCTTATGTGGCGATAGCCCTGATGTTTGTGGTGCACGGATTAC
TGGTTGCTATGGTGGGCGTTAACCCAACCCGTTACTTTAAAAACATCTGGCCAGTACTGACTTTTGCCTTCACATCGCGC
AGCTCTGCGGCCACGATTCCTCTCAATGTGGAAGCGCAAATCACCAAACTGAATGTGCCACCTGCAATTGCTAACCTGTC
AGCTTCATTCGGTGCCACGATTGGGCAAAACGGCTGTGCGGGCATTTACCCTGCGATGTTGGCGGTAATGGTTGCTCCAA
CCGTTGGGATTAACCCACTGGATATTCACTTTATCGTATCGCTGATTGCGATGATCACCATTAGCTCCTTTGGTATTGCA
GGCGTGGGTGGCGGTGCAACCTTCGCAGCTCTGATTGTGCTGCCAGCCATGGGCTTACCCGTCACGATTGCGGCGCTTTT
GATTTCTATCGAGCCACTGATTGATATGGCGCGTACGGCGCTTAACGTATCAGGTTCGATGACGGCAGGCACAGTCACAA
GCCGTTTGCTTAAAGAGACAAACGAAGAGCCTGAGCCGCAAACTCAGCAAGCCTAA

Upstream 100 bases:

>100_bases
GTTATAAAACATGATTTTTTCTCAGTTTATTTTCGTGATAGCGATCGCTATATTCCAAGAAAATCGTTCTCATTTAGGAT
AGAACAATCGGCTTGCTTTG

Downstream 100 bases:

>100_bases
TCTTACCTTGCCAAAGCCGATGCCCAGCATCGGCTTTTTTTTGTTGAAAGGCTGAACAAATAATGGGATAGCACAAGGGC
AGCAATTGCTATGTCAGGGT

Product: sodium/dicarboxylate symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MAVVTLLPPFKDLLMSVVTLAALVIFAGLLLYLFGLQKKAATLSRQVLFGLVLGSAFGLALQVVLGEGHPAIQETLSWVA
IVGNGYVGLLKMVIMPLVLVSMISAVVRLDKNGSLGKISSLTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETAR
IAALESRASTVADLTIPQILLSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQELETPIRTFVEAAQAIVM
RLVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVAIALMFVVHGLLVAMVGVNPTRYFKNIWPVLTFAFTSR
SSAATIPLNVEAQITKLNVPPAIANLSASFGATIGQNGCAGIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIA
GVGGGATFAALIVLPAMGLPVTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETNEEPEPQTQQA

Sequences:

>Translated_471_residues
MAVVTLLPPFKDLLMSVVTLAALVIFAGLLLYLFGLQKKAATLSRQVLFGLVLGSAFGLALQVVLGEGHPAIQETLSWVA
IVGNGYVGLLKMVIMPLVLVSMISAVVRLDKNGSLGKISSLTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETAR
IAALESRASTVADLTIPQILLSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQELETPIRTFVEAAQAIVM
RLVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVAIALMFVVHGLLVAMVGVNPTRYFKNIWPVLTFAFTSR
SSAATIPLNVEAQITKLNVPPAIANLSASFGATIGQNGCAGIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIA
GVGGGATFAALIVLPAMGLPVTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETNEEPEPQTQQA
>Mature_470_residues
AVVTLLPPFKDLLMSVVTLAALVIFAGLLLYLFGLQKKAATLSRQVLFGLVLGSAFGLALQVVLGEGHPAIQETLSWVAI
VGNGYVGLLKMVIMPLVLVSMISAVVRLDKNGSLGKISSLTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETARI
AALESRASTVADLTIPQILLSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQELETPIRTFVEAAQAIVMR
LVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVAIALMFVVHGLLVAMVGVNPTRYFKNIWPVLTFAFTSRS
SAATIPLNVEAQITKLNVPPAIANLSASFGATIGQNGCAGIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIAG
VGGGATFAALIVLPAMGLPVTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETNEEPEPQTQQA

Specific function: Unknown

COG id: COG1823

COG function: function code R; Predicted Na+/dicarboxylate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI223468564, Length=281, Percent_Identity=29.8932384341637, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI223468566, Length=281, Percent_Identity=29.8932384341637, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI5032093, Length=414, Percent_Identity=27.7777777777778, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI40254478, Length=470, Percent_Identity=23.8297872340426, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI21314632, Length=433, Percent_Identity=24.9422632794457, Blast_Score=80, Evalue=6e-15,
Organism=Homo sapiens, GI169790839, Length=267, Percent_Identity=29.5880149812734, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI66773030, Length=414, Percent_Identity=25.1207729468599, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI194239697, Length=240, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI4827012, Length=296, Percent_Identity=26.3513513513513, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1788024, Length=449, Percent_Identity=59.6881959910913, Blast_Score=491, Evalue=1e-140,
Organism=Escherichia coli, GI1790514, Length=430, Percent_Identity=24.4186046511628, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1789947, Length=426, Percent_Identity=24.8826291079812, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71996953, Length=465, Percent_Identity=27.0967741935484, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71983106, Length=423, Percent_Identity=25.0591016548463, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71983099, Length=423, Percent_Identity=25.0591016548463, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17537407, Length=397, Percent_Identity=23.4256926952141, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI193206505, Length=456, Percent_Identity=23.4649122807018, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI193206654, Length=434, Percent_Identity=26.2672811059908, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17541374, Length=441, Percent_Identity=24.4897959183673, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24583025, Length=433, Percent_Identity=24.0184757505774, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI17137668, Length=433, Percent_Identity=24.0184757505774, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24583023, Length=433, Percent_Identity=24.0184757505774, Blast_Score=82, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 48970; Mature: 48839

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVTLLPPFKDLLMSVVTLAALVIFAGLLLYLFGLQKKAATLSRQVLFGLVLGSAFGLA
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQVVLGEGHPAIQETLSWVAIVGNGYVGLLKMVIMPLVLVSMISAVVRLDKNGSLGKISS
HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETARIAALESRASTVADLTIPQIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQELETPIRTFVEAAQAIVM
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVAIALMFVVHGLLVAMVGV
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NPTRYFKNIWPVLTFAFTSRSSAATIPLNVEAQITKLNVPPAIANLSASFGATIGQNGCA
CHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECCCHHHHHCCHHHCCCCCCCCCC
GIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIAGVGGGATFAALIVLPAMGLP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
VTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETNEEPEPQTQQA
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AVVTLLPPFKDLLMSVVTLAALVIFAGLLLYLFGLQKKAATLSRQVLFGLVLGSAFGLA
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQVVLGEGHPAIQETLSWVAIVGNGYVGLLKMVIMPLVLVSMISAVVRLDKNGSLGKISS
HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETARIAALESRASTVADLTIPQIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQELETPIRTFVEAAQAIVM
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVAIALMFVVHGLLVAMVGV
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NPTRYFKNIWPVLTFAFTSRSSAATIPLNVEAQITKLNVPPAIANLSASFGATIGQNGCA
CHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECCCHHHHHCCHHHCCCCCCCCCC
GIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIAGVGGGATFAALIVLPAMGLP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
VTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETNEEPEPQTQQA
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]