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The map label for this gene is cdd [H]

Identifier: 227081403

GI number: 227081403

Start: 1262500

End: 1263387

Strand: Reverse

Name: cdd [H]

Synonym: VCM66_1186

Alternate gene names: 227081403

Gene position: 1263387-1262500 (Counterclockwise)

Preceding gene: 227081404

Following gene: 227081401

Centisome position: 43.68

GC content: 50.56

Gene sequence:

>888_bases
ATGAGAAACCGTATTGAACAAGCATTACAACAAATGCCTGCTTCTTTTGCCCCATATTTACGTGAATTGGTGTTGGCCAA
GGATTTCGATGCCACTTTCTCTGCCGAGCAGTATCAGCAGCTTTTGACCCTTTCGGGTCTGGAAGATGCCGATTTGCGCG
TCGCGCTGTTACCTATCGCTGCCGCTTACTCGTATGCCCCCATCTCTGAATTTTATGTTGGTGCAATTGTACGTGGCATC
TCCGGCCGCCTCTATCTGGGTGCCAATATGGAATTTACTGGTGCGCAGCTTGGGCAAACCGTACATGCTGAGCAGTGCGC
CATTAGCCATGCGTGGATGAAAGGGGAAAAAGGGGTGGCAGACATCACCATCAATTTTAGCCCTTGCGGCCATTGCCGCC
AGTTTATGAATGAACTGACCACCGCGTCTTCGCTGAAAATTCAACTGCCCAAGCGTGCTGCCAAAACTTTGCAAGAGTAC
CTCCCTGAGTCGTTTGGCCCTGCCGATCTCGGCATTGATTCTGGCCTGATGAGCCCGGTCAATCATGGTAAAACCAGTGA
CGATGATGAAGAGCTGATCCAGCAAGCCCTGCGCGCGATGAACATCAGCCACTCGCCTTATACCCAAAACTTCAGTGGGG
TTGCACTGAAAATGCGCAGTGGCGCGATTTACCTTGGCGCGTATGCTGAAAATGCTGCGTTTAACCCAAGTTTGCCACCG
CTACAAGTTGCCTTAGCACAAGCGATGATGATGGGTGAATCATTCGAGGATATTGAAGCCGCCGCTCTGGTAGAGAGTGC
AACCGGCAAAATCAGCCATCTTGCCGATACTCAAGCAACGCTGGAAGTGATCAATCCCGATATTCCACTTTCTTATCTCT
CACTGTAA

Upstream 100 bases:

>100_bases
GAAACATAAAAATAAATTACATAACTTAACGTGACACTGATCACCTTATAAAATCTCGCATTACCTAAAATAGGATTCCA
TGCAATGAAAAGGAATCACT

Downstream 100 bases:

>100_bases
ACCGAATGAAGAGGCCATTGGCCTCTTCACTTTTTGCTACTAGCTCTCTTAGTCCACCTCTTGCTAAAGATGTCGCGCGC
ACACTTTTCCATCACCCACC

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGI
SGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEY
LPESFGPADLGIDSGLMSPVNHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPP
LQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL

Sequences:

>Translated_295_residues
MRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGI
SGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEY
LPESFGPADLGIDSGLMSPVNHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPP
LQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL
>Mature_295_residues
MRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGI
SGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEY
LPESFGPADLGIDSGLMSPVNHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPP
LQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis [H]

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788465, Length=284, Percent_Identity=48.5915492957746, Blast_Score=245, Evalue=3e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2 [H]

EC number: =3.5.4.5 [H]

Molecular weight: Translated: 31956; Mature: 31956

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIA
CCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHH
AAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVA
HHHCCCCHHHHHHHHHHHHCCCCEEECCCCEECHHHHCCHHHHHHHHHHHHHHCCCCCEE
DITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLMSPV
EEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
NHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPP
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCH
LQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCHHHCC
>Mature Secondary Structure
MRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIA
CCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHH
AAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVA
HHHCCCCHHHHHHHHHHHHCCCCEEECCCCEECHHHHCCHHHHHHHHHHHHHHCCCCCEE
DITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLMSPV
EEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
NHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPP
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCH
LQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA