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The map label for this gene is yohK [H]

Identifier: 227081404

GI number: 227081404

Start: 1263557

End: 1264231

Strand: Reverse

Name: yohK [H]

Synonym: VCM66_1187

Alternate gene names: 227081404

Gene position: 1264231-1263557 (Counterclockwise)

Preceding gene: 227081405

Following gene: 227081403

Centisome position: 43.71

GC content: 51.41

Gene sequence:

>675_bases
ATGTGGCTGATCATCACACTTGGGGTATTTTTCGTCGCCCGTTGGGTGGCTCAAAAATGCACTACCCCACTGGCCAATCC
GCTTCTGATCAGTATTGGCATACTTATTCCACTGCTGACTTACCTCAAAGTACCTTTTGAGACTTACTACGCTGATAATC
AGTGGTTGAGTTATCTACTCCAGCCAGCGGTTGTTGCTTTGGCTTATCCACTTTACGAGCAGTTGCCACAAATTCGTGCC
AACTGGCGAATTATCGCTTTGGCTTGTGGCGTGGGTAGTGTGATGTCGATGATCACCGCCAGTTTGATAGCCGTAAGCAT
GGGGGCAGATATAGAACTGATTGCCGCCTTGATGGGAAAATCAGTGACAACGCCGATCGCGATGGAAGTGGCACGCCAGT
TGGGCGGCGAGCCCGCGATTGCTGCGATTTTGGTGCTACTCGTCGGGCTATTTGGTGCCATTCTTGCCTACCCGATTTAC
AAACTGCTCAATATTACGCATCCCATCGCCAAAGGGCTGACCATGGGTACGGTATCCCATGCCCTCGGCACAGCCACTTG
CGCTGAGAAAGATCCTCGCGACGCCGCGTTCAGCTCACTAGCCCTTGTCGTGTGTGGTGTTATCACGTCTGTATTAGCGC
CAAGTCTGTTTGCTTTCGCACTCTGGCTTCAATAA

Upstream 100 bases:

>100_bases
ACCTCGCCCCGATCCTCGCTAGCGCTATCGGCGGTACCTTAATTGTCATGGTGACACTGGGACTGATACTGGATCGAATG
CTCAAGAAGGGGAAAAAGTC

Downstream 100 bases:

>100_bases
TTTCATTTCGAGTGGCGTCACATCTCATACACTTGCAATCGTTATCATGTGTGACGTCACTCTAATAATGAAACATAAAA
ATAAATTACATAACTTAACG

Product: putative Inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MWLIITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLLQPAVVALAYPLYEQLPQIRA
NWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGKSVTTPIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIY
KLLNITHPIAKGLTMGTVSHALGTATCAEKDPRDAAFSSLALVVCGVITSVLAPSLFAFALWLQ

Sequences:

>Translated_224_residues
MWLIITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLLQPAVVALAYPLYEQLPQIRA
NWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGKSVTTPIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIY
KLLNITHPIAKGLTMGTVSHALGTATCAEKDPRDAAFSSLALVVCGVITSVLAPSLFAFALWLQ
>Mature_224_residues
MWLIITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLLQPAVVALAYPLYEQLPQIRA
NWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGKSVTTPIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIY
KLLNITHPIAKGLTMGTVSHALGTATCAEKDPRDAAFSSLALVVCGVITSVLAPSLFAFALWLQ

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=213, Percent_Identity=51.6431924882629, Blast_Score=216, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 23946; Mature: 23946

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLIITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLL
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHH
QPAVVALAYPLYEQLPQIRANWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGK
HHHHHHHHHHHHHHHHHHHCCCEEEEEHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SVTTPIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIYKLLNITHPIAKGLTMGTVSH
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ALGTATCAEKDPRDAAFSSLALVVCGVITSVLAPSLFAFALWLQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWLIITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLL
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHH
QPAVVALAYPLYEQLPQIRANWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGK
HHHHHHHHHHHHHHHHHHHCCCEEEEEHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SVTTPIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIYKLLNITHPIAKGLTMGTVSH
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ALGTATCAEKDPRDAAFSSLALVVCGVITSVLAPSLFAFALWLQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]