| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227081263
Identifier: 227081263
GI number: 227081263
Start: 1115507
End: 1115650
Strand: Reverse
Name: 227081263
Synonym: VCM66_1046
Alternate gene names: NA
Gene position: 1115650-1115507 (Counterclockwise)
Preceding gene: 227081270
Following gene: 227081262
Centisome position: 38.57
GC content: 34.72
Gene sequence:
>144_bases TTGAGCCTCCTTCAAGCCTATCAATCTGTATTGAGTAAAAACGTAAATTTTGCTGAACAGATAGAGCAACACTTATTCAT CACTTTTCTTTACCAGAAAATAATCACCAAGCTGATCAACCATTTTCTATACTTACCCCATTAG
Upstream 100 bases:
>100_bases AACACCAACTCTTAATGACAATGCGCTATCTCACAACACAAAAACGTGAGCAATATCAAACCTACGTTTCAAGCAATCGT TTGGTATAAGACGACGGATT
Downstream 100 bases:
>100_bases TATTAGAAACCCAAAGGTAACTTTATGCGCTACGGTTGGTTTATATTCATCTGGTGTGTTTCATCATTTACTTGGGCCTC CCCCCTCTCTTTTGGCGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 47; Mature: 46
Protein sequence:
>47_residues MSLLQAYQSVLSKNVNFAEQIEQHLFITFLYQKIITKLINHFLYLPH
Sequences:
>Translated_47_residues MSLLQAYQSVLSKNVNFAEQIEQHLFITFLYQKIITKLINHFLYLPH >Mature_46_residues SLLQAYQSVLSKNVNFAEQIEQHLFITFLYQKIITKLINHFLYLPH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 5637; Mature: 5506
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLQAYQSVLSKNVNFAEQIEQHLFITFLYQKIITKLINHFLYLPH CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLLQAYQSVLSKNVNFAEQIEQHLFITFLYQKIITKLINHFLYLPH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA