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The map label for this gene is ybcM [H]

Identifier: 227081250

GI number: 227081250

Start: 1102107

End: 1102895

Strand: Direct

Name: ybcM [H]

Synonym: VCM66_1032

Alternate gene names: 227081250

Gene position: 1102107-1102895 (Clockwise)

Preceding gene: 227081249

Following gene: 227081254

Centisome position: 38.1

GC content: 47.66

Gene sequence:

>789_bases
ATGAGCAAAGTGATCGTGCAGACTGGGCAGTTTAAAGGTTTGCGTAAACAGCCTCTGCATAATGTCTTGATCTATGCGCC
CACCATTATTTGGGTAACACATGGAAATAAACAGCTCTGGTGGCATGACACGACGCTCAATTTTCATTCTGCTGATTGGC
TGATGTTGCCAGCCAATCAGTATCTTACCTTTGTGAATGTACCGCAGCAGGCGCAGTTTTATTCACGCACCTTGACCTTA
CATGAAGCGCCACCTGTAGAGTGGATAACTCAATCAAGTCAATATGAGCGAAATGAACAACCTAGAGTGAGAGTGACGGC
TGAGCTGGCCTACTGTTTTGAGCTGCTTTACGAGATGAACCAACAATCGCTCAGTGAAGAGACACAGCGCCAGTTTGTGC
TGGGTTTTTACGCGCAGCTGCGGGATGAGAAAGCGCTACATCTCCTATTTCCAAGCGATAATGCCTCAATGCGAGAGCGT
TTAGCGCGTTATTTAAGTGTTAATCCCGGTGATGAACACAATATTGAAACGGTTTCGGCGCATTTTGCGATGAGTCGAGC
GACCTTGGCTCGACATTTGGCAGCGGAAGGTACGGGTTTTCGAGAAGTGCTCAGTGAAGTGCGGATGAACTACGCGCTTG
CGCTGCTACAAGAGCTACGTCCTTTGATGGAGGTCGCGGTGGCTTGTGGGTATCAATCATTGACTCGATTTTCGGCGCGC
TTTAAGCAGCAGTATCGGCTTACGCCTTATCAGTATTTACAAACCATTACGGATAAGCCGGAAAAATAA

Upstream 100 bases:

>100_bases
AGGGGCTTCTAATGCTTTAGTGGGTTTTATGCTGCGCGCTAATGCGCTTGAGCAGGCCACGCTAACCGCAACCTATGTGA
ATGAATAATAAGGAAGAGAA

Downstream 100 bases:

>100_bases
AAAGAGCCACCTTAGGTGGCTCTTGAACTATGGATTGGATTACCGAGATTAAATGCCCGCGCGCTTTAGAAGGCCTGCCA
TCAACGCTGAGCTCGATTTC

Product: transcriptional regulator, AraC/XylS family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSKVIVQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFVNVPQQAQFYSRTLTL
HEAPPVEWITQSSQYERNEQPRVRVTAELAYCFELLYEMNQQSLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRER
LARYLSVNPGDEHNIETVSAHFAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQELRPLMEVAVACGYQSLTRFSAR
FKQQYRLTPYQYLQTITDKPEK

Sequences:

>Translated_262_residues
MSKVIVQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFVNVPQQAQFYSRTLTL
HEAPPVEWITQSSQYERNEQPRVRVTAELAYCFELLYEMNQQSLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRER
LARYLSVNPGDEHNIETVSAHFAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQELRPLMEVAVACGYQSLTRFSAR
FKQQYRLTPYQYLQTITDKPEK
>Mature_261_residues
SKVIVQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFVNVPQQAQFYSRTLTLH
EAPPVEWITQSSQYERNEQPRVRVTAELAYCFELLYEMNQQSLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRERL
ARYLSVNPGDEHNIETVSAHFAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQELRPLMEVAVACGYQSLTRFSARF
KQQYRLTPYQYLQTITDKPEK

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=239, Percent_Identity=26.7782426778243, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30561; Mature: 30430

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVIVQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQ
CCCEEEECCCCCCCCCCCHHHEEEEEEEEEEEEECCEEEEEEECCCEECCCCEEEEECCC
YLTFVNVPQQAQFYSRTLTLHEAPPVEWITQSSQYERNEQPRVRVTAELAYCFELLYEMN
EEEEEECCHHHHHHHHEEEECCCCCHHHHHCCHHHCCCCCCCEEEHHHHHHHHHHHHHHH
QQSLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
HFAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQELRPLMEVAVACGYQSLTRFSAR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
FKQQYRLTPYQYLQTITDKPEK
HHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKVIVQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQ
CCEEEECCCCCCCCCCCHHHEEEEEEEEEEEEECCEEEEEEECCCEECCCCEEEEECCC
YLTFVNVPQQAQFYSRTLTLHEAPPVEWITQSSQYERNEQPRVRVTAELAYCFELLYEMN
EEEEEECCHHHHHHHHEEEECCCCCHHHHHCCHHHCCCCCCCEEEHHHHHHHHHHHHHHH
QQSLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
HFAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQELRPLMEVAVACGYQSLTRFSAR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
FKQQYRLTPYQYLQTITDKPEK
HHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]