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The map label for this gene is nth [H]

Identifier: 227081185

GI number: 227081185

Start: 1037793

End: 1038434

Strand: Reverse

Name: nth [H]

Synonym: VCM66_0967

Alternate gene names: 227081185

Gene position: 1038434-1037793 (Counterclockwise)

Preceding gene: 227081186

Following gene: 227081184

Centisome position: 35.9

GC content: 47.35

Gene sequence:

>642_bases
ATGAATAACGCGAAACGGATTGAAATTTTAGAACGGCTGAGGGCTCACAACCCAAAACCCGAAACCGAATTAAACTGGAA
CTCCCCCTTTGAGTTGCTGATTGCGGTGCTGCTCTCCGCGCAAGCGACTGATGTCAGCGTCAACAAAGCCACCGATAAAC
TTTATGCGGTGGCCAATACGCCACAAACCATGCTTGATCTAGGTGTTGATGGCGTCAAAGAGTATATAAAAACCATTGGC
TTATTTAACTCTAAAGCCGAAAACGTCATCAAAACTTGCCGTATTTTGCTTGAAAAGCATCAAGGTGAAGTGCCGGAAGA
TCGTGAAGCATTAGAAGCGCTGCCCGGCGTTGGGCGTAAAACCGCTAATGTGGTGTTGAATACCGCCTTTGGCTGGCCGA
CTATTGCGGTCGATACGCACATCTTTCGCGTCTCCAATCGCACCAAATTTGCGGTCGGCAAAAACGTCGACGAAGTAGAG
CACAAGCTACTCAAAGTCGTACCTAATGAGTTTAAACTCGATGTGCACCACTGGCTGATTCTGCATGGCCGTTACACCTG
TGTCGCGCGCAAACCACGTTGTGGCAGTTGCATTATCGAAGATCTTTGTGAATTCAAAGATAAAGTGTACCCAGAAAGCT
AA

Upstream 100 bases:

>100_bases
ATAAACAGACTGCCGCTCGCCAACCAAAACAACAAAAGCAAGCCATAGAGCGTGCACGCGTGACCAATGTCTAACCTGAT
CAAGGAAGCCAACCCGTCTA

Downstream 100 bases:

>100_bases
TTTCCCAAAAAACCGTTATCCGGAAAGTAAGGAGCTCTTAATGTCCAACCATCGTATTTTGCACACCATGCTACGCGTCG
GCGATTTGGATAAATCGATC

Product: endonuclease III

Products: NA

Alternate protein names: DNA-(apurinic or apyrimidinic site) lyase [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNNAKRIEILERLRAHNPKPETELNWNSPFELLIAVLLSAQATDVSVNKATDKLYAVANTPQTMLDLGVDGVKEYIKTIG
LFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVSNRTKFAVGKNVDEVE
HKLLKVVPNEFKLDVHHWLILHGRYTCVARKPRCGSCIIEDLCEFKDKVYPES

Sequences:

>Translated_213_residues
MNNAKRIEILERLRAHNPKPETELNWNSPFELLIAVLLSAQATDVSVNKATDKLYAVANTPQTMLDLGVDGVKEYIKTIG
LFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVSNRTKFAVGKNVDEVE
HKLLKVVPNEFKLDVHHWLILHGRYTCVARKPRCGSCIIEDLCEFKDKVYPES
>Mature_213_residues
MNNAKRIEILERLRAHNPKPETELNWNSPFELLIAVLLSAQATDVSVNKATDKLYAVANTPQTMLDLGVDGVKEYIKTIG
LFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVSNRTKFAVGKNVDEVE
HKLLKVVPNEFKLDVHHWLILHGRYTCVARKPRCGSCIIEDLCEFKDKVYPES

Specific function: Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines, thymines and guanines. Acts on a damaged strand, 5' from the damaged site. Required for the repair of both oxidative DNA dam

COG id: COG0177

COG function: function code L; Predicted EndoIII-related endonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Nth/MutY family [H]

Homologues:

Organism=Homo sapiens, GI4505471, Length=177, Percent_Identity=30.5084745762712, Blast_Score=96, Evalue=2e-20,
Organism=Escherichia coli, GI1787920, Length=209, Percent_Identity=84.2105263157895, Blast_Score=368, Evalue=1e-103,
Organism=Caenorhabditis elegans, GI17554540, Length=177, Percent_Identity=31.638418079096, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6324530, Length=200, Percent_Identity=26, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45550361, Length=178, Percent_Identity=31.4606741573034, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR004036
- InterPro:   IPR005759
- InterPro:   IPR004035
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF10576 EndIII_4Fe-2S; PF00633 HHH; PF00730 HhH-GPD [H]

EC number: =4.2.99.18 [H]

Molecular weight: Translated: 24012; Mature: 24012

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00764 ENDONUCLEASE_III_1 ; PS01155 ENDONUCLEASE_III_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNAKRIEILERLRAHNPKPETELNWNSPFELLIAVLLSAQATDVSVNKATDKLYAVANT
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHEEEECCC
PQTMLDLGVDGVKEYIKTIGLFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVGRK
CHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
TANVVLNTAFGWPTIAVDTHIFRVSNRTKFAVGKNVDEVEHKLLKVVPNEFKLDVHHWLI
HHHEEEECCCCCCEEEECCEEEEECCCEEEECCCCHHHHHHHHHHHCCCHHEEEHHHEEE
LHGRYTCVARKPRCGSCIIEDLCEFKDKVYPES
EECCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNNAKRIEILERLRAHNPKPETELNWNSPFELLIAVLLSAQATDVSVNKATDKLYAVANT
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHEEEECCC
PQTMLDLGVDGVKEYIKTIGLFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVGRK
CHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
TANVVLNTAFGWPTIAVDTHIFRVSNRTKFAVGKNVDEVEHKLLKVVPNEFKLDVHHWLI
HHHEEEECCCCCCEEEECCEEEEECCCEEEECCCCHHHHHHHHHHHCCCHHEEEHHHEEE
LHGRYTCVARKPRCGSCIIEDLCEFKDKVYPES
EECCEEEEECCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]