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The map label for this gene is rcp [H]

Identifier: 227081154

GI number: 227081154

Start: 1001752

End: 1002666

Strand: Reverse

Name: rcp [H]

Synonym: VCM66_0936

Alternate gene names: 227081154

Gene position: 1002666-1001752 (Counterclockwise)

Preceding gene: 227081156

Following gene: 227081153

Centisome position: 34.66

GC content: 48.63

Gene sequence:

>915_bases
ATGAGAATTTTAATTACTGGAGGAACCGGATTTGTCGGTTTTGAGCTGATAAAGTTGCTCAGTAGTCATGAGCTGCTGGT
TCTCACGCGTGACCTAACCAAAGCCGCTCAGCGCTTTGCGCACATTCCAAGTCAGAATCTGCAATTACTGCGCTCGTTAG
ACGAGCTCTCTGATTTCAACGGGATAGATGCCATCATCAATCTTGCCGGAGAACCGATTGCCGATAAACGCTGGAGCAAA
AGCCAAAAGCAGCGTATTGCCCGTAGTCGCCTAGACATCACGGAACAATTAGTCGAGAAAATTCACGCTAGCGCTCACCC
ACCCGCCGTATTTTTGAGTGGATCTGCCGTGGGTTTTTATGGCGACCAACAACAGCATGCCTTTGATGAGAGCCTTCAGG
TAAGAAGTGACCATTTTTCTCACCAAGTTTGCCAACAGTGGGAACAGCGCGCCCTCAAAGCACAATCTGAACAGACGCGG
GTCTGTTTATTACGTACAGGAATCGTGCTAGCACCGGAAGGTGGGGCACTCAAAAAAATGCTTCCCCCTTATCGACTCGG
GTTAGGAGGGCCGATTGGAGATGGGCAACAATACATGCCTTGGATCCATATGCAGGATATGGTGCGCGCCATCCTTTTTC
TGCTTGAAACCGAACACGCTCAAGGTCCTTATAACCTTTGTGCCCCACATCCTGTGACCAATGCCGAATTCAGCCTCACA
TTAGCCACCACATTGAAGCGTCCGCACCTTTTTAAAACGCCGCAATGGCTCATAAAAATGTTATTGGGTGAAGCCTCTGA
ATTGCTGCTCGATAGCATTAGAGCCAAGCCGAAAAAACTGACCGACCTTGGCTTTCAGTTCCACTATTCACGCATTGATC
GAGCCTTTAATCAGCTCCTTACGGCATCACAATAA

Upstream 100 bases:

>100_bases
ACTATGTGATTGGGTGATCAAGCGTAGCCTGCACCGCGGCAACTTCAAGTAAAAAAGGTATAGTTCGAATCACCGAACCC
GCTTCACACAAGGAGTCACC

Downstream 100 bases:

>100_bases
GCCATAACGGACACAAGCAAACGCATACATAATAGGATTGCGATGACCAAATCGATTTTCATTACTGGCTGCTCAAGCGG
CATTGGTTACATGGCGGCGA

Product: rcp protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRILITGGTGFVGFELIKLLSSHELLVLTRDLTKAAQRFAHIPSQNLQLLRSLDELSDFNGIDAIINLAGEPIADKRWSK
SQKQRIARSRLDITEQLVEKIHASAHPPAVFLSGSAVGFYGDQQQHAFDESLQVRSDHFSHQVCQQWEQRALKAQSEQTR
VCLLRTGIVLAPEGGALKKMLPPYRLGLGGPIGDGQQYMPWIHMQDMVRAILFLLETEHAQGPYNLCAPHPVTNAEFSLT
LATTLKRPHLFKTPQWLIKMLLGEASELLLDSIRAKPKKLTDLGFQFHYSRIDRAFNQLLTASQ

Sequences:

>Translated_304_residues
MRILITGGTGFVGFELIKLLSSHELLVLTRDLTKAAQRFAHIPSQNLQLLRSLDELSDFNGIDAIINLAGEPIADKRWSK
SQKQRIARSRLDITEQLVEKIHASAHPPAVFLSGSAVGFYGDQQQHAFDESLQVRSDHFSHQVCQQWEQRALKAQSEQTR
VCLLRTGIVLAPEGGALKKMLPPYRLGLGGPIGDGQQYMPWIHMQDMVRAILFLLETEHAQGPYNLCAPHPVTNAEFSLT
LATTLKRPHLFKTPQWLIKMLLGEASELLLDSIRAKPKKLTDLGFQFHYSRIDRAFNQLLTASQ
>Mature_304_residues
MRILITGGTGFVGFELIKLLSSHELLVLTRDLTKAAQRFAHIPSQNLQLLRSLDELSDFNGIDAIINLAGEPIADKRWSK
SQKQRIARSRLDITEQLVEKIHASAHPPAVFLSGSAVGFYGDQQQHAFDESLQVRSDHFSHQVCQQWEQRALKAQSEQTR
VCLLRTGIVLAPEGGALKKMLPPYRLGLGGPIGDGQQYMPWIHMQDMVRAILFLLETEHAQGPYNLCAPHPVTNAEFSLT
LATTLKRPHLFKTPQWLIKMLLGEASELLLDSIRAKPKKLTDLGFQFHYSRIDRAFNQLLTASQ

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=307, Percent_Identity=31.9218241042345, Blast_Score=167, Evalue=1e-41,
Organism=Escherichia coli, GI1788642, Length=302, Percent_Identity=48.0132450331126, Blast_Score=295, Evalue=2e-81,
Organism=Drosophila melanogaster, GI28573846, Length=301, Percent_Identity=29.2358803986711, Blast_Score=157, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34163; Mature: 34163

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILITGGTGFVGFELIKLLSSHELLVLTRDLTKAAQRFAHIPSQNLQLLRSLDELSDFN
CEEEEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
GIDAIINLAGEPIADKRWSKSQKQRIARSRLDITEQLVEKIHASAHPPAVFLSGSAVGFY
CHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEC
GDQQQHAFDESLQVRSDHFSHQVCQQWEQRALKAQSEQTRVCLLRTGIVLAPEGGALKKM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECCEEECCCCCCHHHH
LPPYRLGLGGPIGDGQQYMPWIHMQDMVRAILFLLETEHAQGPYNLCAPHPVTNAEFSLT
CCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
LATTLKRPHLFKTPQWLIKMLLGEASELLLDSIRAKPKKLTDLGFQFHYSRIDRAFNQLL
HHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TASQ
CCCC
>Mature Secondary Structure
MRILITGGTGFVGFELIKLLSSHELLVLTRDLTKAAQRFAHIPSQNLQLLRSLDELSDFN
CEEEEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
GIDAIINLAGEPIADKRWSKSQKQRIARSRLDITEQLVEKIHASAHPPAVFLSGSAVGFY
CHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEC
GDQQQHAFDESLQVRSDHFSHQVCQQWEQRALKAQSEQTRVCLLRTGIVLAPEGGALKKM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECCEEECCCCCCHHHH
LPPYRLGLGGPIGDGQQYMPWIHMQDMVRAILFLLETEHAQGPYNLCAPHPVTNAEFSLT
CCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
LATTLKRPHLFKTPQWLIKMLLGEASELLLDSIRAKPKKLTDLGFQFHYSRIDRAFNQLL
HHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TASQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]