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The map label for this gene is ybeY [C]

Identifier: 227081134

GI number: 227081134

Start: 981978

End: 982442

Strand: Reverse

Name: ybeY [C]

Synonym: VCM66_0916

Alternate gene names: 227081134

Gene position: 982442-981978 (Counterclockwise)

Preceding gene: 227081135

Following gene: 227081133

Centisome position: 33.96

GC content: 47.1

Gene sequence:

>465_bases
ATGAGTATTGAACTGGATTTGCAATTGGCAGTCGAAAATGAACATGGGCTACCAAGCGAAGCGGAGTTTGCTTTGTGGCT
CACTCGAACCATCACACCGTTTCAGGCACAAGCTGAGGTGACGGTTCGGATTGTCGATGAAGCAGAAAGCCATGCGCTGA
ATTTGAACTACCGTGGTAAAGATAAACCGACCAATGTGCTGTCTTTTCCATTTGAAGCTCCTTCGGGGATGGAAATGGAT
CTGCTTGGCGACTTGGTGATTTGCCGCCAAGTCGTTGAGCGTGAAGCAATTGAGCAAAATAAGCCTTTGCAAGCACATTG
GGCGCATATGGTTGTACATGGCAGCCTGCATCTGCTAGGTTATGACCACATCGAGGATGATGAAGCCGAAGAGATGGAAT
CTCTCGAAACCGAAATTATGCAAGAGATGGGTTTTACCGACCCATATCTGGCAGAAAAAGAGTAA

Upstream 100 bases:

>100_bases
AAGAGTATGAGCAGCGTCGTCGTGAAGAACGTGAAAATAAATTACTCGAAATGCAGCGCGCGGAAATGACGCTGAGCCAC
AACAATGAGTCGAATCCCTC

Downstream 100 bases:

>100_bases
CCCTTATCCTTTTAGATAAGGCCTATGTGAGCTATCACACATCTGATAGCGTTAGTGAATTGAGACATAATGAACGAAGA
CAATTCTCAGAATTCGGAAG

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSIELDLQLAVENEHGLPSEAEFALWLTRTITPFQAQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFEAPSGMEMD
LLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE

Sequences:

>Translated_154_residues
MSIELDLQLAVENEHGLPSEAEFALWLTRTITPFQAQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFEAPSGMEMD
LLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE
>Mature_153_residues
SIELDLQLAVENEHGLPSEAEFALWLTRTITPFQAQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFEAPSGMEMDL
LGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=150, Percent_Identity=76, Blast_Score=223, Evalue=6e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17505; Mature: 17374

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELDLQLAVENEHGLPSEAEFALWLTRTITPFQAQAEVTVRIVDEAESHALNLNYRGK
CCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCC
DKPTNVLSFPFEAPSGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECEEEEEE
YDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIELDLQLAVENEHGLPSEAEFALWLTRTITPFQAQAEVTVRIVDEAESHALNLNYRGK
CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCC
DKPTNVLSFPFEAPSGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECEEEEEE
YDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA