| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is ybeZ [H]
Identifier: 227081135
GI number: 227081135
Start: 982439
End: 983542
Strand: Reverse
Name: ybeZ [H]
Synonym: VCM66_0917
Alternate gene names: 227081135
Gene position: 983542-982439 (Counterclockwise)
Preceding gene: 227081136
Following gene: 227081134
Centisome position: 34.0
GC content: 48.73
Gene sequence:
>1104_bases TTGAGCAATAAAATCATAACCTTAGAAATCAATTTAGAACCATCCGATAACCACCGACTCGCCAGCCTATGCGGTCCTTT TGATGACAACATCAAGCACCTTGAACGTCGCTTGGGTGTCGAAATCAACTACCGCGGCAACTTCTTCACTATCGTGGGTC AACCTCATACTGCCGCTGCTGCACTCGACATCATCAAAACACTTTACGTTGAAACGGCTCCGGTGCGTGGTCAGATTACC GATATTGAACCTGAGCAAATTCACCTTGCCATCAAAGAATCCGGCGTGCTTGAACAACACAGCGAATCCAGCATTGCTCA CGGCAAAGAAGTGTTTGTCAAAACCAAAAAAGGCGTGATCAAACCGCGGACACCGAATCAAGCTCAATACTTGATGAATA TGGTGACCCATGACATCACCTTTGGTGTTGGTCCTGCTGGTACCGGTAAAACTTACCTTGCGGTCGCGGCTGCTGTGGAT GCGCTTGAGCGCCAAGAAATTCGCCGAATTCTATTGACTCGTCCAGCGGTTGAAGCGGGCGAAAAGCTCGGTTTTCTGCC GGGCGATCTAAGCCAAAAAGTCGACCCTTATTTGCGCCCACTTTACGATGCTCTATTCGAAATGCTTGGTTTTGAGCGGG TAGAAAAGCTGATTGAGCGCAATGTGATTGAGGTCGCTCCGCTGGCGTACATGCGTGGTCGTACTTTAAACGACGCGTTT ATTATTCTCGATGAAAGCCAAAACACTACCGTTGAACAGATGAAAATGTTCCTGACGCGGATTGGTTTTAATTCGCGCGC CGTCATTACTGGTGACGTGACGCAAATCGACTTACCGCGCGGCGCGAAATCCGGTCTGCGCCATGCGATTGAAGTGCTCA ATGAAGTCGATGAGATCAGCTTTAACTTCTTCCAAGCTGACGATGTGGTGCGCCACCCAGTGGTTGCTCGTATCGTTAAC GCTTATGAAAAGTGGGAAGCGCAAGATCAAAAAGAGCGCAAAGAGTATGAGCAGCGTCGTCGTGAAGAACGTGAAAATAA ATTACTCGAAATGCAGCGCGCGGAAATGACGCTGAGCCACAACAATGAGTCGAATCCCTCATGA
Upstream 100 bases:
>100_bases GATGAGCTTGGGGTTGCTACATTTACTCCTTAATCTCGTATACACTGTCAATAAGCGTCCGGTCACAATCGGACGTTTAT TGACATACTGAGAGGCAAAT
Downstream 100 bases:
>100_bases GTATTGAACTGGATTTGCAATTGGCAGTCGAAAATGAACATGGGCTACCAAGCGAAGCGGAGTTTGCTTTGTGGCTCACT CGAACCATCACACCGTTTCA
Product: phoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MSNKIITLEINLEPSDNHRLASLCGPFDDNIKHLERRLGVEINYRGNFFTIVGQPHTAAAALDIIKTLYVETAPVRGQIT DIEPEQIHLAIKESGVLEQHSESSIAHGKEVFVKTKKGVIKPRTPNQAQYLMNMVTHDITFGVGPAGTGKTYLAVAAAVD ALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF IILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLNEVDEISFNFFQADDVVRHPVVARIVN AYEKWEAQDQKERKEYEQRRREERENKLLEMQRAEMTLSHNNESNPS
Sequences:
>Translated_367_residues MSNKIITLEINLEPSDNHRLASLCGPFDDNIKHLERRLGVEINYRGNFFTIVGQPHTAAAALDIIKTLYVETAPVRGQIT DIEPEQIHLAIKESGVLEQHSESSIAHGKEVFVKTKKGVIKPRTPNQAQYLMNMVTHDITFGVGPAGTGKTYLAVAAAVD ALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF IILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLNEVDEISFNFFQADDVVRHPVVARIVN AYEKWEAQDQKERKEYEQRRREERENKLLEMQRAEMTLSHNNESNPS >Mature_366_residues SNKIITLEINLEPSDNHRLASLCGPFDDNIKHLERRLGVEINYRGNFFTIVGQPHTAAAALDIIKTLYVETAPVRGQITD IEPEQIHLAIKESGVLEQHSESSIAHGKEVFVKTKKGVIKPRTPNQAQYLMNMVTHDITFGVGPAGTGKTYLAVAAAVDA LERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAFI ILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLNEVDEISFNFFQADDVVRHPVVARIVNA YEKWEAQDQKERKEYEQRRREERENKLLEMQRAEMTLSHNNESNPS
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=344, Percent_Identity=79.9418604651163, Blast_Score=544, Evalue=1e-156, Organism=Escherichia coli, GI1787257, Length=205, Percent_Identity=44.390243902439, Blast_Score=188, Evalue=6e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 41587; Mature: 41456
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKIITLEINLEPSDNHRLASLCGPFDDNIKHLERRLGVEINYRGNFFTIVGQPHTAAA CCCCEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEECCCCHHHH ALDIIKTLYVETAPVRGQITDIEPEQIHLAIKESGVLEQHSESSIAHGKEVFVKTKKGVI HHHHHHHHHHCCCCCCCEEECCCHHHEEEEEECCCCHHHCCCCHHCCCHHEEEECCCCEE KPRTPNQAQYLMNMVTHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAG CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH EKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF HHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE IILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLNEVDEIS EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHC FNFFQADDVVRHPVVARIVNAYEKWEAQDQKERKEYEQRRREERENKLLEMQRAEMTLSH CEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NNESNPS CCCCCCC >Mature Secondary Structure SNKIITLEINLEPSDNHRLASLCGPFDDNIKHLERRLGVEINYRGNFFTIVGQPHTAAA CCCEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEECCCCHHHH ALDIIKTLYVETAPVRGQITDIEPEQIHLAIKESGVLEQHSESSIAHGKEVFVKTKKGVI HHHHHHHHHHCCCCCCCEEECCCHHHEEEEEECCCCHHHCCCCHHCCCHHEEEECCCCEE KPRTPNQAQYLMNMVTHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAG CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH EKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF HHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE IILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLNEVDEIS EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHC FNFFQADDVVRHPVVARIVNAYEKWEAQDQKERKEYEQRRREERENKLLEMQRAEMTLSH CEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NNESNPS CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]