Click here to switch to the map view.

The map label for this gene is rlpB [H]

Identifier: 227081128

GI number: 227081128

Start: 975452

End: 976093

Strand: Reverse

Name: rlpB [H]

Synonym: VCM66_0910

Alternate gene names: 227081128

Gene position: 976093-975452 (Counterclockwise)

Preceding gene: 227081129

Following gene: 227081127

Centisome position: 33.75

GC content: 47.82

Gene sequence:

>642_bases
TTGCCTAATAACGAGACTGAAGCATCCATGCGTAACACTCTTTTCCCTACTTTGAAATGGTCACTCTTGGTTCTGATGAC
AAGCTTACTCACGGCTTGTGGTTTCCACTTGCGCGGTGATTACGATATTCCCCAAGAACTCTCTCGTATGTCACTGACCA
GCTATGACCAATACAGCACCTTTACTCGTATGGTGCACCGTCAGTTACGTTTGAATAAAATCGATCTGCAAGCTCCAGCT
GAAGATCTACCTAATCTGCATCTGCTCAGTGAAAGTACTGGTGAACGCACCCTATCGCTTTATCAAAACACGCGTGCAGC
CGAAATTGAGCTGACCTTTGTCGCAAGCTATCGCGTCACCGTACCTGAGCTGGGCAGCCGCACCTTTACCACTAGCGTAA
CGCGCAGCTACTTAGATAACCCTCTAACAGCCCTAGCAAAATCCGTTGAGCGCGACATGATTGAAGATGAAATGCGCAAG
CTAGCTGCCAGCCAAATTGTGCGCCAGATGGCACGTTTAAAAGCAGACTTTGCACGTAAAACGTTGGATGATGAAAGTAT
TGAAGGCAAAGGGATCACTGACTATCGCGTTGATACGCAAGAAGTAGCCAACCCAGTGTCAACAGAAGGCAGCAGTGAGT
AG

Upstream 100 bases:

>100_bases
GATGGCTTATTTTACTGTCAGTAAACAGGGTTCGCCCTGTTTACTTATCTCAGCTTATCGCACAGCAAGCTTTCGCTTTT
GGTGAGCTGAGATAAGTATT

Downstream 100 bases:

>100_bases
TTTCGATGCGCATTTACGCTGAAAAACTGGCTGAATCACTGCACAAAACGCTCTATCCGATTTACCTCGTATTCGGTAAT
GAGCCACTGCTGCTCCAAGA

Product: rare lipoprotein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MPNNETEASMRNTLFPTLKWSLLVLMTSLLTACGFHLRGDYDIPQELSRMSLTSYDQYSTFTRMVHRQLRLNKIDLQAPA
EDLPNLHLLSESTGERTLSLYQNTRAAEIELTFVASYRVTVPELGSRTFTTSVTRSYLDNPLTALAKSVERDMIEDEMRK
LAASQIVRQMARLKADFARKTLDDESIEGKGITDYRVDTQEVANPVSTEGSSE

Sequences:

>Translated_213_residues
MPNNETEASMRNTLFPTLKWSLLVLMTSLLTACGFHLRGDYDIPQELSRMSLTSYDQYSTFTRMVHRQLRLNKIDLQAPA
EDLPNLHLLSESTGERTLSLYQNTRAAEIELTFVASYRVTVPELGSRTFTTSVTRSYLDNPLTALAKSVERDMIEDEMRK
LAASQIVRQMARLKADFARKTLDDESIEGKGITDYRVDTQEVANPVSTEGSSE
>Mature_212_residues
PNNETEASMRNTLFPTLKWSLLVLMTSLLTACGFHLRGDYDIPQELSRMSLTSYDQYSTFTRMVHRQLRLNKIDLQAPAE
DLPNLHLLSESTGERTLSLYQNTRAAEIELTFVASYRVTVPELGSRTFTTSVTRSYLDNPLTALAKSVERDMIEDEMRKL
AASQIVRQMARLKADFARKTLDDESIEGKGITDYRVDTQEVANPVSTEGSSE

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=162, Percent_Identity=35.8024691358025, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 24122; Mature: 23990

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNNETEASMRNTLFPTLKWSLLVLMTSLLTACGFHLRGDYDIPQELSRMSLTSYDQYST
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHH
FTRMVHRQLRLNKIDLQAPAEDLPNLHLLSESTGERTLSLYQNTRAAEIELTFVASYRVT
HHHHHHHHHHCCCCCCCCCHHHCCCEEEECCCCCHHHHHHHHCCCCEEEEEEEEEEEEEE
VPELGSRTFTTSVTRSYLDNPLTALAKSVERDMIEDEMRKLAASQIVRQMARLKADFARK
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDDESIEGKGITDYRVDTQEVANPVSTEGSSE
HCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PNNETEASMRNTLFPTLKWSLLVLMTSLLTACGFHLRGDYDIPQELSRMSLTSYDQYST
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHH
FTRMVHRQLRLNKIDLQAPAEDLPNLHLLSESTGERTLSLYQNTRAAEIELTFVASYRVT
HHHHHHHHHHCCCCCCCCCHHHCCCEEEECCCCCHHHHHHHHCCCCEEEEEEEEEEEEEE
VPELGSRTFTTSVTRSYLDNPLTALAKSVERDMIEDEMRKLAASQIVRQMARLKADFARK
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDDESIEGKGITDYRVDTQEVANPVSTEGSSE
HCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA