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The map label for this gene is rlpA [C]

Identifier: 227081122

GI number: 227081122

Start: 969727

End: 970518

Strand: Reverse

Name: rlpA [C]

Synonym: VCM66_0904

Alternate gene names: 227081122

Gene position: 970518-969727 (Counterclockwise)

Preceding gene: 227081123

Following gene: 227081121

Centisome position: 33.55

GC content: 46.21

Gene sequence:

>792_bases
ATGAACCGAATTTATTTATACTTACTGCTCGTTTTAATCCTCGCTGGATGTAGCTCTCCGGGGGGGCGCTATGATATGTC
TGACGATCAAGCACCCGATACACCACTGTCTGTCGAACATATTGAAGATGCACATCCGCAATATGAACCGTACAGCTTCG
GGGGTAATAAAGATTACAATCTGCGTGGTAAGAGCTATCGCATCATTAAAAACCCTAAAGGATTTACCGAAAGTGGCAAA
GCCTCTTGGTACGGCAAAAAATTCCATGGCCACCTCACCTCAAACGGTGAGATTTACGACATGTACTCGATGACGGCAGC
GCATAAAACGCTACCGATCCCCAGTTATGTCAAAGTGACCAATACGGACAATGGCAAATCGACCGTGGTAAGAGTCAATG
ACCGTGGGCCTTTCCATGATGGAAGAATCATCGACCTTAGCTATGCAGCCGCCTATAAAATTGGGGTGGTCCAAGCAGGA
ACCGCCAATGTGCGCATTGAAGTGATTACCGTCGATAAACCCACTAAACCGCGCCCGAAAAGTAAAAACAACGCCCTCGA
ATATGTGATTCAGGTGGTTTCATCACAACATATCGAACGCGTGCGAACTTTAGCGCAAAACCTCGGTCAGAACTTATCGG
CACCGAGCTTCGTCGAGAGTACAAATAATACGCATCGCTTATTCCTCGGGCCATTTACTGACGATGACCTGACGCAGACT
TTACTTGAACAAGTAAAATCCGCAGGCTATGACAGCGCATTTATCAAGACGATTAATAAACGTGCTAAATGA

Upstream 100 bases:

>100_bases
TGATTAGTTATGGTGGAACGTCGATGGTGACACTGATGGCCGGTTTCGGTATTTTGATGTCCATCCATACGCACCGCAAA
GCGTTTTCGAAGACGATTTA

Downstream 100 bases:

>100_bases
CCACTCAAACCTGACCTGAGTCTATCTGGTCTGGTTTGAGACGTTATTTTTGTTAAGATTACGGACACTTAAGTAGAACT
AAGCATTCACCATGAAAAAA

Product: putative rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNRIYLYLLLVLILAGCSSPGGRYDMSDDQAPDTPLSVEHIEDAHPQYEPYSFGGNKDYNLRGKSYRIIKNPKGFTESGK
ASWYGKKFHGHLTSNGEIYDMYSMTAAHKTLPIPSYVKVTNTDNGKSTVVRVNDRGPFHDGRIIDLSYAAAYKIGVVQAG
TANVRIEVITVDKPTKPRPKSKNNALEYVIQVVSSQHIERVRTLAQNLGQNLSAPSFVESTNNTHRLFLGPFTDDDLTQT
LLEQVKSAGYDSAFIKTINKRAK

Sequences:

>Translated_263_residues
MNRIYLYLLLVLILAGCSSPGGRYDMSDDQAPDTPLSVEHIEDAHPQYEPYSFGGNKDYNLRGKSYRIIKNPKGFTESGK
ASWYGKKFHGHLTSNGEIYDMYSMTAAHKTLPIPSYVKVTNTDNGKSTVVRVNDRGPFHDGRIIDLSYAAAYKIGVVQAG
TANVRIEVITVDKPTKPRPKSKNNALEYVIQVVSSQHIERVRTLAQNLGQNLSAPSFVESTNNTHRLFLGPFTDDDLTQT
LLEQVKSAGYDSAFIKTINKRAK
>Mature_263_residues
MNRIYLYLLLVLILAGCSSPGGRYDMSDDQAPDTPLSVEHIEDAHPQYEPYSFGGNKDYNLRGKSYRIIKNPKGFTESGK
ASWYGKKFHGHLTSNGEIYDMYSMTAAHKTLPIPSYVKVTNTDNGKSTVVRVNDRGPFHDGRIIDLSYAAAYKIGVVQAG
TANVRIEVITVDKPTKPRPKSKNNALEYVIQVVSSQHIERVRTLAQNLGQNLSAPSFVESTNNTHRLFLGPFTDDDLTQT
LLEQVKSAGYDSAFIKTINKRAK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=175, Percent_Identity=38.2857142857143, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 29290; Mature: 29290

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIYLYLLLVLILAGCSSPGGRYDMSDDQAPDTPLSVEHIEDAHPQYEPYSFGGNKDYN
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
LRGKSYRIIKNPKGFTESGKASWYGKKFHGHLTSNGEIYDMYSMTAAHKTLPIPSYVKVT
CCCCEEEEEECCCCCCCCCCCCCCCCEEECEECCCCCEEEEEHHHHHHHCCCCCCEEEEE
NTDNGKSTVVRVNDRGPFHDGRIIDLSYAAAYKIGVVQAGTANVRIEVITVDKPTKPRPK
CCCCCCEEEEEECCCCCCCCCEEEEEEHHHEEEEEEEEECCCEEEEEEEECCCCCCCCCC
SKNNALEYVIQVVSSQHIERVRTLAQNLGQNLSAPSFVESTNNTHRLFLGPFTDDDLTQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCCCHHHHH
LLEQVKSAGYDSAFIKTINKRAK
HHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNRIYLYLLLVLILAGCSSPGGRYDMSDDQAPDTPLSVEHIEDAHPQYEPYSFGGNKDYN
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
LRGKSYRIIKNPKGFTESGKASWYGKKFHGHLTSNGEIYDMYSMTAAHKTLPIPSYVKVT
CCCCEEEEEECCCCCCCCCCCCCCCCEEECEECCCCCEEEEEHHHHHHHCCCCCCEEEEE
NTDNGKSTVVRVNDRGPFHDGRIIDLSYAAAYKIGVVQAGTANVRIEVITVDKPTKPRPK
CCCCCCEEEEEECCCCCCCCCEEEEEEHHHEEEEEEEEECCCEEEEEEEECCCCCCCCCC
SKNNALEYVIQVVSSQHIERVRTLAQNLGQNLSAPSFVESTNNTHRLFLGPFTDDDLTQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCCCHHHHH
LLEQVKSAGYDSAFIKTINKRAK
HHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]