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The map label for this gene is ygdD [C]

Identifier: 227081072

GI number: 227081072

Start: 913370

End: 913756

Strand: Direct

Name: ygdD [C]

Synonym: VCM66_0854

Alternate gene names: 227081072

Gene position: 913370-913756 (Clockwise)

Preceding gene: 227081071

Following gene: 227081078

Centisome position: 31.58

GC content: 51.94

Gene sequence:

>387_bases
ATGAACAGTAAGTATTTACTCGCTCTCGGGGGCTTGCTATCGGGTGTTGCGGTGGGTTTAGGCGCCTTTGCGGCGCACGG
TTTAAAAAAGATGTTAAGCCCGTATTTACTCGGTGTGTTTGAGACGGGCGTGCAGTATCAATTTATCCATGCATTGGCTC
TGCTCATGTGCGGCGTATTATTGTTGCTGCCGCTCCATGAAGCCGCGCATAAAGGCTTTCGCCGCGCGGCACAGTTTTTC
TTGGTCGGGATCGTCTGTTTTAGCGGTAGCTTGTACGCGCTCGCACTCACGGGTGTGAAGTGGTTTGGTCCTATCACGCC
TTTTGGTGGCGTGATGTTCATCTTAGGCTGGATCTGGTTTAGTTACGCGGCGTGGAAAAGTCAGTAG

Upstream 100 bases:

>100_bases
CGCCACTTTCCGCGATTGGATGCTGAAAAAGGCGCGCAGTGAGCAAGTGGATATTTTGCAACATAAGCACAACCAGTAAA
TTCGGGTTATGAGGTAAAGG

Downstream 100 bases:

>100_bases
TCTGTGTTGTGATGCCTAATCAGAGGGGATTTAGTCCGCGGACGATGAGTTAAAACGGATATCTTGCAAGTTAAACCCAA
GCTCGATGTCCGTTTTCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNSKYLLALGGLLSGVAVGLGAFAAHGLKKMLSPYLLGVFETGVQYQFIHALALLMCGVLLLLPLHEAAHKGFRRAAQFF
LVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWFSYAAWKSQ

Sequences:

>Translated_128_residues
MNSKYLLALGGLLSGVAVGLGAFAAHGLKKMLSPYLLGVFETGVQYQFIHALALLMCGVLLLLPLHEAAHKGFRRAAQFF
LVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWFSYAAWKSQ
>Mature_128_residues
MNSKYLLALGGLLSGVAVGLGAFAAHGLKKMLSPYLLGVFETGVQYQFIHALALLMCGVLLLLPLHEAAHKGFRRAAQFF
LVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWFSYAAWKSQ

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=117, Percent_Identity=36.7521367521368, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13842; Mature: 13842

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKYLLALGGLLSGVAVGLGAFAAHGLKKMLSPYLLGVFETGVQYQFIHALALLMCGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LLLPLHEAAHKGFRRAAQFFLVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SYAAWKSQ
HHHHHCCC
>Mature Secondary Structure
MNSKYLLALGGLLSGVAVGLGAFAAHGLKKMLSPYLLGVFETGVQYQFIHALALLMCGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LLLPLHEAAHKGFRRAAQFFLVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SYAAWKSQ
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA